| Annotation |
|---|
| Description | jgi|Araly1|943535|scaffold_604079.1 |
| Sequence |
TCGCTTTTTT CCACTCTCCG ATGGCTCCGT CACGCCGACA GATCAGTGGA AGATCTCCGT TGGTGAACCA GCAGCGTCAA ATCACCTCCT TCTTTGGCAA ATCTGCTTCC TCTTCTTCTT CTCCGTCTCC ATCACCTTCA CCATCTCTCT CCAATAAGAA AACCCCCAAA CCTAACCCTA ACCCTAATTC TCCGTCTCCG TCACCATCTC CGCCTAAGAA AACCCCTAAA TTGAATCCTA ACCCTAGTTC TGATCCTCCT GCTCGTAGTC CTAGCCCTGG TCCTGCGACG CCTTCTCCTG TACAGTCCAA GTTTAAGAAG CCCCTTCTCG TCATCGGACA AACACCTTCG CCTCCTCAAT CGGCGGTAAT TACTTACGGT GAGGAGGTGG TGGGGAAGCA AGTTAGGGTT TATTGGCCGT TGGATAAGAA ATGGTATGAT GGGAGCGTGA CGTTTTATGA TAAGGGTGAG GGTAAGCATG TGGTTGAGTA TGAAGATGGG GAAGAAGAGT CTTTGGATTT GGGGAAGGAG AAGATTGAGT GGGTGGTCGG GGAAAAATCA GGAGATAGGT TTAAGCGATT GAGACGAGGC GCTTCAGCTC TCAGAAAAGT TGTGACGGAT GATGATGATG ATGTGGAGAT GGGTAATGTG GAAAAAGAGA AAGGAGATAA AAGTGACGGT GATGATTCTA GCGATGAAGA TTGGGGAAAG AATGTGGGGA AGCAGGTATG CGAGAGCGAA GAAGACGATG TGGAGTTGGT TGATGAGAAT GAGATGGATG AAGATGAGCT GGTGGAAGAG AAAGATGAAG AAACTCCTAA AGGAAGTAAA GTTTCCAAAA CTGACTCTAG AAAGCGGAAG ACAAGTGAAG TAACGAAATC AGGTGGTGAG AAGAAAAGCA GGACTGATAA AGACACTATT TTGAAAGGTT TTAAGGCTTC TGTTGTGGAG CCTCCTATGA AGATTGGAGA AGCTGATAGG GTGGTCAAGA ATTTGGAAGA TAACATATTG GATGGAGATG CTCTTGCTAG ATTTGGTGCT CGTGAATCTG AGAAATTCCG CTTCCTGGGA GTAGACCGAA GGGATGCTAA AAGGAGACGC CCTACTGATG AGAATTATGA TCCAAGGACA CTATACCTTC CGCCTGATTT TGTGAAAAAA TTAACAGGGG GCCAGAGACA ATGGTGGGAG TTTAAATCAA AGCATATGGA CAAAGTTGTA TTCTTCAAGA TGGGTAAATT CTATGAGCTT TTTGAGATGG ATGCACATGT AGGAGCTAAG GAACTGGATA TACAGTACAT GAAGGGAGAA CAACCTCATT GTGGATTTCC GGAGAAGAAT TTCTCTGTAA ACATTGAGAA ATTAGTTAGA AAGGGCTATC GGGTTTTAGT TGTGGAGCAA ACAGAAACAC CTGATCAGCT GGAGCAACGC CGGAAAGAGA CAGGCTCCAA GGATAAAGTT GTGAAGCGCG AAATATGTGC AGTTGTTACG AAAGGAACGC TGACAGATGG GGAGATGCTA TTAACTAATC CGGATGCATC TTATCTAATG GCCTTGACTG AAGGAGGAGA AAGTTTAACT GATCAGACAG CAGAGCACAA TTTTGGTGTC TGTTTGGTTG ATGTTGCGAC AAAGAAGATA ATGCTGGGCC AGTTCAAGGA TGATCAAGAC TGCAGTGCAT TATCTTGCCT GCTATCTGAG ATGAGGCCGG TGGAAATTAT TAAACCAGCT AAGGTGTTGA GTTCTGCAAC AGAGAGAACA ATAGTTAGAC AAACCCGAAA TCCCTTAGTA AATAATCTGG TCCCACTTTC TGAATTTTGG GATTCAGAGA AGACCATACA TGAAGTTGGA ATTTTCTACA AGCGAATCAG TTGTCAACCG TCTTCTGCTT ATTCTAGTGA AGGAAAGATT CCAGGTGATG GTTCAAGCTT CCTTCCAAAA ATGTTGTCTG AATTAGCAAC TGAAGATAAG AATGGTAGCC TAGCACTCTC TGCTCTTGGT GGTGCCATTT ACTACCTGCG ACAAGCATTC TTGGATGAGA GTCTGCTTAG ATTTGCCAAG TTTGAATCCC TGCCTTGCTG TGATTTCAGC AACGTTAATG AGAAACAGCA CATGGTTCTT GATGCTGCTG CTCTTGAAAA CCTTGAAATA TTTGAAAACA GTAGAAATGG AGGCTATTCG GGAACGCTGT ATGCTCAACT GAATCAATGT GTCACTGCAT CTGGGAAACG GTTACTTAAA ACATGGCTGG CGAGACCTTT ATATAATCCG AAACTGATCA AGGAACGACA AGATGCTGTA GCAATTCTGC GGGGTGAAAA TCTTCCGTAC TCACTGGAAT TTCGGAAGGC GTTGTCCAGA CTTCCGGACA TGGAACGGTT GATTGCACGT ATGTTTTCTA GCATTGAAGC TAGTGGAAGA AATGGCGATA AAGTGGTGTT ATATGAAGAT ACGGCAAAGA AGCAGGTACA AGAATTCATA TCAACTCTAC GTGGTTGTGA AACAATGGCA GAAGCATGCT CTTCTCTCCG TGCTATCTTG AAGCACGATA AATCCAGGCG GCTGTTTCAT TTACTAACTC CTGGTCAAAT TCTTCCGAAC ATATCTTCCT CCATTAAGTA TTTCAAGGAT GCTTTTGACT GGGTAGAAGC TCACAATTCT GGTCGTGTAA TACCCCATGA AGGAGCTGAT GAAGAGTATG ATTGTGCCTG CAAAACAGTA GAAGAATTTG AGTCCAGTTT GAAAAAACAT CTGAAAGAGC AACGGAAATT ACTCGGAGAT CCATCTATAA ACTATGTTAC TGTTGGAAAA GATGAATACC TCTTGGAAGT TCCTGAAATT TTAAGTGGGA GTGTTCCTCG TGATTATGAA TTATGCTCAT CGAAAAAGGG TGTCTCTCGA TATTGGACTC CTACCATAAA GAAATTATTA AAAGAGCTAT CACAAGCAAA ATCTGAAAAA GAGTCGGCTC TGAAGAGCAT TTCACAGAGA TTGATTGGAC GTTTCTGTGA GCATCAAGAA AAATGGAGAC AATTGGTTTC TGCAACAGCT GAGCTGGACG TGTTGATCAG CCTCGCTTTT GCAAGTGATT CTTATGAAGG AGTAAGATGC CGCCCAGTAA TATCAGGTTC TACATCTGAT GATGTTCCAC ACTTGTCTGC CACTGGTCTA GGGCATCCAG TTCTAAGGGG TGATACTCTA GGCAGAGGTT CTTTTGTACC AAATAATGTA AAGATAGGTG GTGCTGAGAA AGCCAGTTTC ATCCTCCTCA CAGGCCCTAA TATGGGTGGA AAATCAACCC TACTTCGCCA AGTTTGCTTG GCTGTAATCT TGGCTCAGAT TGGAGCAGAT GTCCCAGCAG AAACCTTTGA GGTTTCGCCT GTTGACAGAA TTTGTGTCCG GATGGGTGCA AAAGATCATA TTATGGCAGG ACAAAGCACG TTCTTAACAG AACTTTCAGA AACTGCGGTA ATGTTGACAT CAGCTACCCG AAACTCTCTG GTGGTACTAG ATGAGCTTGG ACGAGGAACA GCCACATCAG ATGGACAAGC CATTGCGGAA TCCGTACTTG AGCACTTCAT AGACAAGGTG CAGTGTAGAG GATTGTTCTC TACTCATTAT CATCGTCTAT CTGTGGATTA TCAAACCAAT CCAAAGGTCT CACTTTGCCA TATGGCATGT CAAGTAGGAG AAGGAATTGG TGGAGTAGAA GAAGTGACAT TTCTCTATAG ACTGACGCCT GGTGCATGTC CTAAAAGCTA TGGAGTTAAT GTTGCTCGGC TAGCTGGTCT TCCAGATTAC GTACTTCAGA GAGCCGTGAT AAAATCCCAA GAATTTGAGG CCTTGTATGG TAAAAAACAG AGAAAAACTG ATCATAAAAT GGCAGCAGTG ATAAAGCAGA TCATCAGCAG TGTTGCATCA GATTCTGATT ACTCAGCTTC AAAAGACTCA TTGTCTGAGC TACACTCCAT GGCCAATACA TTTCTCCGGT TGACCAACTG ATTTAACTGC TCCATGCCTT TC |
| Length | 4022 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 22481446.. 22488506 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT4G02070.1 |
| Description | MUTS homolog 6 |
| TAIR curator summary | encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH6 bound the (+T) substrate strongly, (T/G) well, and (+AAG) no better than it did a (T/A) homoduplex. |
| Alias | [ATMSH6][MSH6][MSH6-1][ARABIDOPSIS THALIANA MUTS HOMOLOG 6][MUTS homolog 6][MUTS HOMOLOG 6-1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1 |
Ahg495004 | PAS domain-containing protein tyrosine kinase family protein |
| 6.9282 |
Ahg495044 | mitotic checkpoint family protein |
| 7.2111 |
Ahg924045 | calpain-type cysteine protease family |
| 12 |
Ahg333928 | global transcription factor group E4 |
| 14.9666 |
Ahg496142 | nuclear RNA polymerase C1 |
| 15.4272 |
Ahg921284 | C2 calcium/lipid-binding plant phosphoribosyltransferase family protein |
| 15.4919 |
Ahg324042 | |
| 17.5499 |
Ahg474074 | Phosphatidylinositol 3- and 4-kinase family protein |
| 18.9737 |
Ahg483227 | WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related |
| 20.567 |
Ahg484517 | alpha/beta-Hydrolases superfamily protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
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