Detail


ID : Ahg930314

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|930314|scaffold_302771.1
Sequence
TTTCTCTGTG AATAAACCCA TCAATGGCGA TGAAACCCAG TCTCCATTTT TACCCAACTA CTGTCACGAA GAAGTTTGTC TACTCGTTTC AAAGCTCCTT CTGCTCCCGT TTCATAAGGT ATAGTTCATC AATTTCAATT GGGTCTTGTA AAGGTGTTGT CTTTAGTTCG AGAAATTATC AAATTCCATC GAGGAGGTTT AGCTTTAGTA GGGATGGTAA TAATGGTGAG TGGTTAGAGA ATTGGAATAG AATTCAGAAA CGTAATCAAC CTAAACCACC AAAGGTAGTT GTGAATTATC GAAAAGAAGG AGGGATTGTG AGTGGTGATG ATAATAGTAG TAGAGATGGT GATGGTAGTA CAATGGAGAA GATTGTGGAG AAATTGAAGA AGTATGGATA TATGGAGAAG GGTGAGGAGG TTCAGAGTAA AGAGATTGAA CAAGAGAGAA GGATTGAGAA AGGGTCGGTG GAGGATATAT TTTATGTTGA GGAAGGGAAT TTACCGAATA CTAGAGGTGG ATTCACTGAG GAATCGTTAC TTGGTAGAGA TGATGTCTTT GGAAGTAATG GAGAAGTTGG TTTTACTTGG GAGAAGATGA GTGCCAAGGA GAAGAAGGAG TTGGAAGCAG AGTGGACTGC GAAGAAGGAG AATAGATACT CGCTTGCGGA AATGACTCTT CCGGAATCAG AGCTAAGGAG GTTGAGGAAT TTGACGTTTC GAACAGCGAG CAAGATGAGG ATTCGGGGTG GAGGTGTGAC TCAGGTGGCA GTGGATGCTA TTAAGGAGAA GTGGAAAAGC GCAGAGATTG TGAGATTGAA GATTGAAGGA GCAAGCGCGC TTAACATGAG AAAGATGCAT GAGATATTAG AGAAAAAAAC TGGTGGTTTA GTGATTTGGA GGTCCGGGAC TTCCATCTCT TTGTACAGAG GTGTCAGTTA TGAGCTTCCA TCAGGAAAAT GGAACAAGCA AAGAAGAGAA GAGACGCCAC CTTCTTCCTT ACCTGAAACT ACAACTATGG TGGATAATAG TGATGAAAAA GTTCATCTTC CTCAATTAGA GCAGGAGACA ACTAGTGTGG AAAAGAAAGA CCAGACATCT CAACCAGAAG TAGAATACGA AGATGAAATT GATAAACTGT TAGATGGTCT TGGTCCTAGA TTCATGGACT GGCCGGGAGA TAATCCATTA CCTGTAGATG CTGATTTGCT TCCAGGCGCC ATTCCTGGTT ATGAACCACC TTTCAGGGTA CTTCCTTATG GAGTAAGATC ATCTCTGGGA CCAAAGGAGG CAACAGCTTT GAGAAGACTT GCCAGATCTA TTCCTCCACA CTTTGCTTTA GGTCGAAGTA GGCAGCTCCA AGGCTTGGCG ACAGCAATGG TCAGGTTATG GGAAAAGAGT ATGCTTGCAA AAATTGCTAT TAAACGTGGC GTGCAATCAA CTACCAGTGA GAGAATGGCT GAAGATCTCA AGAAATTGAC AGGAGGTATA ATGCTCTCTA GGAACAAAGA TTTCTTGGTT TTCTACAGAG GAAAGAATTT TTTGTCACGA GAAGTAGCTG ACGCATTGGT GGAGCAGGAG AGGTTTGCAA GGACTTTGCA AGACGAAGAA GAACAGGCAC GTTTGAGAGG TTCATCGGCT CTGATTGTCC CATGTATTGA ACCTGCGAAA AAACTTGTTT CTGCTGGTAC TCTTGGTGAA ACTCTTGATG CGACTGGTAA GTGGGGAAAG AATCTGGACG ATGATGATCA TTCCGACGAA GTGAAACAAG AGGTTGAGAT ATTGAGGCAT GAAAATCTTG TCAGGAAGCT GGAAAGGAAA CTTGCTTTTG CTGAGAGAAA GCTGTTGAAA GCTGAACGTG GTTTGGCTAA GGTGGAAGAG TGTCTTAAGC CTGCGGAGCA GAGAGAAGAC CCAGAAAGCA TAACTGATGA AGAGAGATTT ATGTTCCGCA AGCTTGGCTT GAAAATGAAA GCTTTCTTAC TTCTAGGTAG GCGAGGAGTT TTTGATGGTA CGGTGGAGAA CATGCACTTG CACTGGAAAT ACAGAGAGTT GGTCAAAATT ATTGTGAAGG CTAAAACTTT TGACGGTGTA AAGAAAGTGG CATTAGCCCT TGAAGCCGAG AGTGGTGGTA TCCTGGTTTC TATTGACAAG GTTACCAAAG GATATGCCAT TATCGTGTAC AGAGGGCAAG ACTATAAGCG TCCTACCATG TTGAGGCCGA AAAATCTTTT GACAAAGAGG AAGGCTTTAG CGCGTTCCAT TGAGCTCCAA AGACGCGAGG GTCTTCTGAA GCACATTTCT ACGATGCAGG CGAAAGCAGA ACAGCTGAGA GTTGAAATTG AACAAATGGA GAAGGTAACA GACAAGGGTG ATGAAGAGTT ATACAACAAG CTTGATGTGG CTTATGCTTC TAGCGATGAG GAGACAGACG GAGAAGAAGA TGATGCATTT CCAGAGACAT ATGCAGAAGG AGAAGATGGT GAGATTCTAG CAGAAGGGGA ACTATCTGAA ACAGAGGATG AAGACTGGGA TTCAAATGAA TCGGAAACCG GATTTGGTGA TGATTCTGTA CTTTACACAG AGGATCTTCA TACAAAACCA GAAGATTTAC CGAGTGAGAA AGTTCATCTG CAGCATCAGA GCTAATTGAA GATAAACGTA AAAGAC
Length2666
Protein Sequence
Protein Residue
Map Locationscaffold_3: 9805427.. 9809008
Download Sequence
A.thaliana
AGI-codeAT3G23070.1
DescriptionCRM family member 3A
TAIR curator summaryEncodes a CRM domain protein CFM3a, involved in group IIB intron splicing in chloroplasts.
Alias[ATCFM3A][CFM3A][CRM family member 3A]
Gene coexpression
MR
MR Locus Description
5.65685 Ahg913547 polypyrimidine tract-binding protein 3
6.9282 Ahg477686 plastid transcriptionally active 3
15.748 Ahg491679 FAD/NAD(P)-binding oxidoreductase family protein
19.8997 Ahg941110 ortholog of maize chloroplast splicing factor CRS1
23.8118 Ahg485272 Tetratricopeptide repeat (TPR)-like superfamily protein
23.8747 Ahg480587 pentatricopeptide (PPR) repeat-containing protein
31.749 Ahg927898 polyribonucleotide nucleotidyltransferase, putative
35.5528 Ahg920104
35.8748 Ahg488743 Galactose oxidase/kelch repeat superfamily protein
40.3113 Ahg492177 antitermination NusB domain-containing protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression