Detail



ID : Ahg940484

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|940484|scaffold_601028.1
Sequence
CCCTCTCGGA GACAGAAGCC ATGGGGAGAA AAAAACTAGA AATCAAGCGA ATTGAGAACA AAAGTAGCCG ACAAGTCACC TTCTCCAAAC GTCGCAACGG TCTCATCGAG AAAGCTCGTC AGCTTTCTGT TCTCTGTGAC GCATCCGTCG CTCTTCTCGT CGTCTCTGCT TCCGGCAAGC TCTACAGCTT CTCCTCCGGC GATAACCTGG TCAAGATCCT TGATCGATAT GGGAAACAAC ATGCTGATGA TCTTAAAGCC TTGGATATTC AGTCAAAAGC TCTGAACTAT GGTTCACACC ATGAGCTACT TGAACTTGTG GAAAGCAAGC TTGTGGGATC AAATGTCAAT AATGTGAGTG TCGATACTCT TGTTCAACTG GAGGAACACT TTGAGACTGC CCTCTCCGTA ACTAGAGCCA AGAAGACAGA ACTAATGTTG AAGCTTGTTG AGAACCTCAA AGAAAAGGAG AAATTGCTGA AAGAAGAGAA CCAGGTTTTG GCTAGCCAGA TGGAGAAGAA TCATCATGTG GGAGCAGAAG CTGAGATGGA GATTTCACCT GCAGGACAAA TCTCCGACAA TCTTCCGGTG ACTCTCCCGC TGCTTAATTA GCCACCTTTA ATCGGCGGTT G 
Length631
Protein Sequence
Protein Residue
Map Locationscaffold_6: 3865761.. 3871828
Download Sequence
A.thaliana
AGI-codeAT5G10140.1
DescriptionK-box region and MADS-box transcription factor family protein
TAIR curator summaryMADS-box protein encoded by FLOWERING LOCUS C - transcription factor that functions as a repressor of floral transition and contributes to temperature compensation of the circadian clock. Expression is downregulated during cold treatment. Vernalization, FRI and the autonomous pathway all influence the state of FLC chromatin. Both maternal and paternal alleles are reset by vernalization, but their earliest activation differs in timing and location. Histone H3 trimethylation at lysine 4 and histone acetylation are associated with active FLC expression, whereas histone deacetylation and histone H3 dimethylation at lysines 9 and 27 are involved in FLC repression. Expression is also repressed by two small RNAs (30- and 24-nt) complementary to the FLC sense strand 3’ to the polyA site. The small RNAs are most likely derived from an antisense transcript of FLC. Interacts with SOC1 and FT chromatin in vivo. Member of a protein complex.
Alias[AGL25][FLC][FLF][RSB6][AGAMOUS-like 25][FLOWERING LOCUS C][FLOWERING LOCUS F][REDUCED STEM BRANCHING 6]
Gene coexpression
MR
MR Locus Description
3.16228 Ahg480216 oxophytodienoate-reductase 3
4.12311 Ahg476870 K-box region and MADS-box transcription factor family protein
6.245 Ahg480634 Auxin efflux carrier family protein
6.7082 Ahg476384 Protein of unknown function (DUF1677)
8 Ahg479130 translationally controlled tumor protein
8.12404 Ahg475701 ADP-ribosylation factor A1E
8.12404 Ahg479749 alternative oxidase 1A
8.83176 Ahg495334 heat shock protein 90.1
12.49 Ahg317230 acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase
13.4907 Ahg490463 UDP-Glycosyltransferase superfamily protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression