| Annotation |
|---|
| Description | jgi|Araly1|940484|scaffold_601028.1 |
| Sequence |
CCCTCTCGGA GACAGAAGCC ATGGGGAGAA AAAAACTAGA AATCAAGCGA ATTGAGAACA AAAGTAGCCG ACAAGTCACC TTCTCCAAAC GTCGCAACGG TCTCATCGAG AAAGCTCGTC AGCTTTCTGT TCTCTGTGAC GCATCCGTCG CTCTTCTCGT CGTCTCTGCT TCCGGCAAGC TCTACAGCTT CTCCTCCGGC GATAACCTGG TCAAGATCCT TGATCGATAT GGGAAACAAC ATGCTGATGA TCTTAAAGCC TTGGATATTC AGTCAAAAGC TCTGAACTAT GGTTCACACC ATGAGCTACT TGAACTTGTG GAAAGCAAGC TTGTGGGATC AAATGTCAAT AATGTGAGTG TCGATACTCT TGTTCAACTG GAGGAACACT TTGAGACTGC CCTCTCCGTA ACTAGAGCCA AGAAGACAGA ACTAATGTTG AAGCTTGTTG AGAACCTCAA AGAAAAGGAG AAATTGCTGA AAGAAGAGAA CCAGGTTTTG GCTAGCCAGA TGGAGAAGAA TCATCATGTG GGAGCAGAAG CTGAGATGGA GATTTCACCT GCAGGACAAA TCTCCGACAA TCTTCCGGTG ACTCTCCCGC TGCTTAATTA GCCACCTTTA ATCGGCGGTT G |
| Length | 631 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 3865761.. 3871828 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G10140.1 |
| Description | K-box region and MADS-box transcription factor family protein |
| TAIR curator summary | MADS-box protein encoded by FLOWERING LOCUS C - transcription factor that functions as a repressor of floral transition and contributes to temperature compensation of the circadian clock. Expression is downregulated during cold treatment. Vernalization, FRI and the autonomous pathway all influence the state of FLC chromatin. Both maternal and paternal alleles are reset by vernalization, but their earliest activation differs in timing and location. Histone H3 trimethylation at lysine 4 and histone acetylation are associated with active FLC expression, whereas histone deacetylation and histone H3 dimethylation at lysines 9 and 27 are involved in FLC repression. Expression is also repressed by two small RNAs (30- and 24-nt) complementary to the FLC sense strand 3Â’ to the polyA site. The small RNAs are most likely derived from an antisense transcript of FLC. Interacts with SOC1 and FT chromatin in vivo. Member of a protein complex. |
| Alias | [AGL25][FLC][FLF][RSB6][AGAMOUS-like 25][FLOWERING LOCUS C][FLOWERING LOCUS F][REDUCED STEM BRANCHING 6] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 3.16228 |
Ahg480216 | oxophytodienoate-reductase 3 |
| 4.12311 |
Ahg476870 | K-box region and MADS-box transcription factor family protein |
| 6.245 |
Ahg480634 | Auxin efflux carrier family protein |
| 6.7082 |
Ahg476384 | Protein of unknown function (DUF1677) |
| 8 |
Ahg479130 | translationally controlled tumor protein |
| 8.12404 |
Ahg479749 | alternative oxidase 1A |
| 8.12404 |
Ahg475701 | ADP-ribosylation factor A1E |
| 8.83176 |
Ahg495334 | heat shock protein 90.1 |
| 12.49 |
Ahg317230 | acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase |
| 13.4907 |
Ahg490463 | UDP-Glycosyltransferase superfamily protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
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| The four seasons |
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| Growth Chamber expression |
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