| Annotation |
|---|
| Description | jgi|Araly1|943318|scaffold_603862.1 |
| Sequence |
TTCCTCGGGG ACAAAGAAGA GGAAGATGAG CTCATGGAAC TACGTTGTTA CGGCTCACAA ACCGACCAGT GTCACTCACT CGTGCGTTGG CAACTTCACA AGTCCTCAAG AGCTCAATCT CATTGTTGCG AAATGTACCC GAATTGAGAT CCATTTGCTT ACCCCGCAGG GACTTCAGCC TATGCTGGAT GTTCCTATAT ATGGAAGAAT CGCTACTCTG GAGTTGTTCC GGCCCCATGG CGAAGCACAA GACTTTTTGT TCATTGCAAC TGAGAGATAC AAATTCTGTG TTCTTCAGTG GGATCCTGAG TCCTCTGAGC TTATTACAAG AGCAATGGGG GATGTTTCTG ATCGTATAGG CCGACCAACA GACAATGGTC AGATTGGCAT AATTGATCCA GATTGTAGAT TAATTGGACT CCATCTGTAT GACGGCTTGT TCAAGGTTAT TCCATTTGAT AATAAGGGAC AGCTCAAAGA AGCTTTTAAT ATCAGGCTTG AGGAATTGCA GGTTCTGGAT ATCAAGTTTC TGTTTGGATG TGCAAAGCCC ACTATTGCAG TACTATATCA GGACAACAAA GATGCTCGTC ATGTCAAAAC ATATGAAGTC TCTCTAAAAG ATAAGGATTT TGTCGAGGGT CCATGGTCAC AGAATAATCT CGACAATGGT GCTGACTTGC TGATTCCTGT ACCACCACCG CTCTGTGGTG TCCTTATTAT TGGTGAAGAA ACAATTGTCT ATTGCAGTGC TAATGCATTC AAAGCAATAC CAATAAGACC TTCCATCACT AAAGCATATG GAAGAGTTGA TGTTGATGGC TCTAGGTATC TTCTTGGTGA CCATGCTGGA CTGATTCATC TTCTTGTTAT AACGCATGAG AAAGAAAAGG TCACTGGCCT AAAAATTGAG CTTTTGGGTG AAACATCTAT TGCATCGACT ATATCGTACC TTGACAATGC CGTTGTCTTT GTCGGCTCAA GCTATGGCGA TTCACAGCTA GTAAAGCTGA ATCTACACCC TGATGCAAAA GGCTCATATG TAGAAGTCTT GGAAAGGTAT ATCAACTTGG GGCCTATTGT CGACTTTTGT GTAGTTGACC TCGAGAGACA GGGGCAAGGT CAGGTTGTAA CTTGTTCTGG AGCATTTAAG GATGGTTCCC TCCGCGTAGT TCGCAATGGA ATAGGAATCA ATGAACAGGC GTCTGTGGAA CTTCAAGGTA TCAAAGGAAT GTGGTCGTTG AAATCTTCAA TTGATGAAGC CTTCGATACA TTCCTCGTTG TTAGCTTTAT CAGTGAAACT CGTATATTAG CCATGAATCT TGAGGATGAA CTGGAAGAAA CAGAGATTGA GGGCTTCTTG TCTCAAGTGC AGACGTTATT TTGCCATGAT GCTGTGTACA ATCAACTTGT ACAGGTTACC TCAAATTCTG TTAGACTAGT CAGTTCTACA ACTAGAGAAT TGCGGGACGA GTGGCATGCC CCGGCTGGAT TCACTGTTAA TGTTGCAACT GCAAATGCCA GCCAGGTTCT TTTGGCGACT GGAGGTGGGC ATTTGGTGTA TCTAGAAATT GGAGATGGGA AATTGACGGA AGTGCAACAT GCCCTTTTGG AGTACGAGGT TTCTTGTCTT GATATAAACC CTATCGGTGA CAATCCTAAT TACAGTCAGC TAGCTTCGGT TGGGATGTGG ACAGATATAA GTGTGAGGAT CTTTTCGCTG CCAGAATTGA CTCTTATTAC AAAAGAGCAA CTCGGAGGGG AAATAATTCC CCGATCTGTT CTTCTTTGTG CATTCGAAGG GATATCTTAC TTGCTCTGTG CTCTTGGAGA TGGCCATCTT TTGAACTTCC AGTTGGATAC AACTACCGGG CAGTTGAAAG ACAGGAAAAA AGTATCACTA GGGACTCAGC CTATAACTCT GCGTACTTTT TCATCAAAAA GCGCCACACA TGTCTTTGCT GCATCAGATA GACCAACCGT GATCTATAGC AGCAACAAGA AACTGTTATA CAGCAATGTC AATCTTAAAG AAGTTAGTCA TATGTGCCCT TTCAACTCTG CTGCTTTTCC CGACAGTTTA GCAATTGCCA GGGAAGGTGA ACTTACGATT GGTACCATTG ATGATATTCA GAAGCTTCAC ATACGCACTA TTCCTCTTGG AGAGCATGCT CGTCGAATTT GCCATCAGGA GCAGACACGT ACATTTGGTA TCTGCAGTTT GGGAAACCAG TCAAATGCCG AAGAATCTGA AATGCACTTT GTCCGTCTTT TAGACGACCA GACTTTCGAG TTTATGTCAA CTTACCCCTT GGATTCCTTT GAATACGGTT GCTCCATTCT GAGCTGCTCA TTCACCGACG ATAAAAATGT CTATTACTGC GTTGGAACCG CATATGTTTT ACCGGAGGAA AATGAACCAA CTAAGGGAAG GATATTAGTA TTTATAGTTG AAGATGGGAG GTTGCAGTTA ATCGCCGAGA AAGAAACCAA AGGAGCTGTT TATTCTCTCA ATGCCTTTAA TGGAAAACTT CTTGCTGCTA TTAATCAGAA GATTCAGTTG TACAAGTGGA TGCTGCGGGA TGATGGCACT CGTGAACTGC AGTCTGAATG CGGACATCAC GGACACATTC TAGCTCTCTA TGTACAGACC CGTGGAGACT TTATCGTTGT TGGTGATCTC ATGAAATCAA TCTCCTTATT GTTATACAAG CACGAGGAAG GTGCAATTGA GGAGCGGGCT CGGGATTACA ATGCGAATTG GATGTCAGCG GTTGAGATAC TAGATGATGA TATTTACCTC GGTGCTGAGA ACAATTTCAA TCTGTTAACA GTGAAAAAGA ACAGTGAAGG TGCTACTGAT GAAGAACGAG GACGGTTGGA GGTAGTTGGA GAGTATCACC TTGGGGAATT TGTGAACAGA TTCCGCCATG GATCTCTAGT AATGAGGCTA CCTGATTCAG AGATTGGTCA GATCCCAACT GTCATCTTTG GTACCGTCAA TGGAGTGATA GGAGTAATAG CTTCACTTCC TCAAGAACAG TATACTTTCT TGGAGAAGTT GCAGTCGAGT CTGAGGAAAG TGATTAAAGG AGTTGGCGGA TTAAGCCACG AGCAATGGAG GTCGTTTAAT AACGAGAAAA GAACCGCAGA AGCGAGGAAT TTCTTGGATG GTGACTTAAT CGAATCGTTT CTGGATCTGA GTAGAAACAA GATGGAGGAT ATATCGAAAT CCATGAATGT TCAAGTGGAA GAGTTGTGTA AGAGAGTTGA AGAACTCACT AGGCTTCACT GAATCAAATC AATCGATGCC AAT |
| Length | 3313 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 21546696.. 21553217 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT4G05420.1 |
| Description | damaged DNA binding protein 1A |
| TAIR curator summary | Structurally similar to damaged DNA binding proteins.DDB1a is part of a 350 KDa nuclear localized DET1 protein complex. This complex may physically interact with histone tails and while bound to chromatin- repress transcription of genes involved in photomorphogenesis. |
| Alias | [DDB1A][damaged DNA binding protein 1A] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 4.58258 |
Ahg928500 | Clathrin, heavy chain |
| 9.16515 |
Ahg357610 | |
| 11.0454 |
Ahg495758 | Class II aminoacyl-tRNA and biotin synthetases superfamily protein |
| 12 |
Ahg486045 | Protein kinase family protein |
| 16.1245 |
Ahg943403 | C2H2 and C2HC zinc fingers superfamily protein |
| 16.4924 |
Ahg473428 | tobamovirus multiplication 2A |
| 20.6398 |
Ahg329795 | G2484-1 protein |
| 27.8747 |
Ahg934119 | transcription activators |
| 28.931 |
Ahg479043 | WUS-interacting protein 2 |
| 29.95 |
Ahg486626 | Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|