| Annotation |
|---|
| Description | jgi|Araly1|946256|scaffold_702485.1 |
| Sequence |
TAAAAAACAA AAACAGAGCA ATGGACTCTG TTTCTTCTTC TTCCTTCATC TCCTCCACAT TCTCTCTTCA CCACTCTCTT CTTCGCCGCC GATCTTCCTC TCCTCTCCTC CTCCGTATCA ACTCCGCAGT CGTCGAAGAA CGTACTCCGA TCACGAACCC AAGCGACAAC AATGATCGTC GTAACAAACC CAAAAAACTC CACAACCGAA CCAATCACAC CGCAGTCTCT TCTCCTGCGA AACCCCGACC AGAAATGACT CTCGCAACAG CTCTCTTCAC CACCGTCGAA GATGTAATCA ACACGTTCAT CGATCCACCG TCACGTCCTT CCGTCGATCC AAAACACGTT CTCTCCGATA ACTTCGCTCC TGTTCTCGAC GAGCTTCCTC CAACAGACTG TGAAATCATC CACGGCTCTC TTCCGCCGTC ACTCAACGGC GCTTACATCC GTAACGGTCC AAATCCACAG TTTCTCCCTC GTGGTCCTTA CCATCTCTTT GACGGCGACG GTATGCTTCA CGCGATTCGT ATCCATAATG GTAAAGCCAC TCTCTGTAGC AGATACGTCA AGACTTATAA GTACAACGTG GAGAAACAAA CCGGAGCTCC GGTTATGCCT AACGTGTTTT CCGGATTTAA CGGTGTAACG GCATCAGTAG CTCGTGGAGC TTTAACGGCG GTTAGAGTTT TAACCGGACA GTATAATCCG GTTAACGGCA TTGGTTTAGC TAATACAAGT CTTGCTTTCT TCTGTAACCG TCTCTTCGCT TTAGGAGAAT CTGATTTACC CTACGTCGTC CGATTAACTG ATTCTGGAGA TATTGAAACG ATCGGACGGT ACGATTTCGA CGGGAAATTA GCGATGAGTA TGACAGCTCA TCCAAAAATC GATCCAATAA CCGGAGAGAC TTTCGCTTTC CGGTACGGTC CGGTTCCACC GTTTTTAACG TTTTTCCGGT TTGATTCCGC CGGGAAAAAA CAAAGAGACG TTCCGATATT CTCGATGACG TCTCCGTCGT TTCTCCATGA CTTCGCGATC ACGAAACGTC ACGCGATTTT CGCGGAGATT CAGATTGGGA TGAGGATGAA TCCGATGGAT TTGATGTTTG AAGGTGGTTC TCCGGTTGGT AATGATAACG GAAAAACACC GAGGCTTGGA GTGATTCCAA AGTACGCCGG AGATGAATCG GAGATGAAAT GGTTCGAAGT TCCTGGATTT AATATCATTC ACGCCATTAA TGCTTGGGAT GAAGACGATG GAAACTCCGT CGTTTTGATC GCTCCGAATA TTATGTCAAT TGAACATACT TTAGAGAGGA TGGATTTGGT TCACGCTTTG GTGGAGAAGG TGAAGATCGA TCTCGTCACC GGAATTGTGA CACGTCATCC GATTTCAGCG AGGAATCTCG ATTTCGCTGT GATTAATCCG GCGTTTCTCG GAAGACAGAG CAGGTACGTT TACGCGGGGA TTGGAGATCC GATGCCGAAA ATCTCCGGAG TTGTGAAGCT TGATGTGTCT AAAGGAGATC GGGATGATTG CACGGTGGCG CGTAAAATGT ACGGTAAAGG TTGTTACGGT GGTGAACCGT TTTTCGTAGC TAGGGATCCT GGGAATCCGG AGGCGGAGGA GGATGATGGT TACGTGGTGA CGTATGTTCA CGATGAAGTG ACTGGAGAAT CGAAGTTTCT GGTGATGGAC GCAAAATCGC CGGAGCTTGA AATCGTCGCC GCCGTGAGGC TACCGCGAAG GGTTCCGTAC GGATTCCATG GGTTATTTGT GAAGGAGAGT GACCTAACTA TAGGTAACTG CAATAGTTAG TGGAATAATT AAGTTCTTAA |
| Length | 1840 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_7: 9672820.. 9674670 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT4G19170.1 |
| Description | nine-cis-epoxycarotenoid dioxygenase 4 |
| TAIR curator summary | chloroplast-targeted member of a family of enzymes similar to nine-cis-epoxycarotenoid dioxygenase |
| Alias | [CCD4][NCED4][carotenoid cleavage dioxygenase 4][nine-cis-epoxycarotenoid dioxygenase 4] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1.73205 |
Ahg496897 | zeaxanthin epoxidase (ZEP) (ABA1) |
| 9 |
Ahg476235 | MYB-like 2 |
| 9.59166 |
Ahg938917 | phytochrome interacting factor 3-like 6 |
| 10.3923 |
Ahg936324 | cytochrome P450, family 71, subfamily B, polypeptide 4 |
| 10.4881 |
Ahg486458 | Galactose oxidase/kelch repeat superfamily protein |
| 12.1244 |
Ahg494620 | RmlC-like cupins superfamily protein |
| 13.4164 |
Ahg472829 | B-box type zinc finger protein with CCT domain |
| 13.7477 |
Ahg315903 | STT7 homolog STN7 |
| 14.4568 |
Ahg897595 | cycling DOF factor 3 |
| 15.1987 |
Ahg332802 | phytosulfokine 5 precursor |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|