| Annotation |
|---|
| Description | jgi|Araly1|948632|scaffold_800519.1 |
| Sequence |
TTGATCCGAT TTGTACAATT ATGGCGAGTC TGATGGGAGA TGATTGCAAT TTAGATATAA TGCCGCCTAG GAAGAAGAAT AAGGGATCCA ATAAGGATAA GCTGAATTCA AATAAGAAGA CGGTTTCAAG CAGATGTCGG AAACGGAAAC TGAATTCAAA TAAGGACACC GTAGTGAGCA AATCTCAGAA ACGGAAGCTG AAGAAATTGG AGGAAGATAA GGAGAAAGAA ATCATCTTTG CAAAAACTGC CGAGTTGTTA GACAAGTACA AAATTTCTGA GGATGTATCA TCGCTATTAC AATCTTCAAA AGTTATAGGA AGATCAGCAA CTAAGCTGGA AAAACGAAGG AGAGCAATGC AACTTTCTAA AGCTGGTGTT GAGACTGAGC ATTCTGATGA ATCAGTCGAG CAAAATGACG ATGATGATTC TTGTATGGAC GAACCTACAG CACCAGATAT GGACGAACCT ACAACACCGG AACATGTTGA AATCGAAATC CCAACTTTTG CAACTGATTC TGAGCAACAG ATTCATGCCC ATGAACTCGG TTCTGATCTA GTGATTTCTG CTGAAGAAAC TAGTAGCAAG CTTGTGGTAG ACGACACTGT GGATATGATC CTACAGACAA CTTGTCGTGA TGATGAAGAA GGCTCACAAA GAATGGATGG GACCATTGAG AATGAAGATG TAACTGTACA AGGACCTCGT GTGCCTGCGT TTGTAGTTCA TGTTTCAAGA CCAGCCGAAG TTGAAGAGAC GAGGAAGGAT CTTCCGATAG TAATGATGGA GCAGGAGATA ATGGAAGCTA TTAATCGTCA CCCTGCGGTT ATTATTTCAG GACAAACCGG GTGTGGTAAA ACCACTCAAG TTCCTCAGTT CCTTTATGAA GCTGGTTTTG GTTCAAAGCA ATTCAGTTCT CGAAGTGGGA TTATCGGGAT TACCCAACCA CGCCGTGTCG CCGTCCTTGC CACTGCCAAG AGAGTGGCAT TTGAGCTTGG TGTTCGTCTT GGTAAAGAAG TCGGGTTTCA AGTTAGGTAT GACAAAAAGA TTGGCGAAAA CTCCTCTATC AAGTTTTTGA CCGATGGGAT TTTACTTCGT GAGATACAGA ATGACTTCTT ATTGAGGCGT TACTCTGTAA TAATTCTCGA TGAAGCCCAT GAAAGAAGTT TGAACACAGA CATTCTAATT GGGATGCTCA CTCGAGTCAT CAAAATCCGA CAGGAATACT ACGAGGAACA ACAAAAGAGT CTTCAATCTG GAGGCACAGT AACCTCAGAA TACCAAATCA CGCCACTTAA GCTTATATTG ATGAGTGCGA CTTTGCGAGT GAAAGATTTT GTATCAGGGA AAAGGTTATT CCCTAAGATA CCTCCGCTTA TAGAGGTTCC CACTCGACAG TATCCAGTAA CTATTCATTT CTCCAGAAAG ACTGAGATTG TTGATTATAT CGGTCAAGCT TATAAGAAAG TGATGTCAAT TCACAAAAAG TTACCACAAG GAGGAATACT TGTTTTTGTG ACTGGGCAGA GAGAAGTTGA CTATTTATGT GAGAAGTTAC GTAAGTCTTC AAAGGAACTT GTTGTTCAAG CTGCTAAAAG AGATGCTTAT GTGAAGAAGA AATGCGATGA TGGTTCATTT GGTGGTGTTG ACATGAAGGA GATTGCTGAA GCATTTGATG ATGGCTCCGA CAATCAAAAT TACAGGTTTA GCTCGCATGG AGAAGATCCT TCTGAAATTG GTGATGGTAA CTATGATGAT GATTTTGAAG AAGAAGACAT GTACGAGTCT GATGAAGACA GGGACTGGGA AACCGTTGAT GACGGCTTCA CAAGTTCATT TGTAGAGGAA GGGAAGCTTG ATGCTCTCCG AGCAGCGTTT AATGGTTTGG CAGACAAAAA TGGATCCGTA TCTGCTGAGC CAACAAAGAC CATTGCAGCA GAGAATCAAG AGGCTGAGCA GGTAAAAAAC ACATTTTCTC CAGGAAAATT ACGTGTTCTT CCACTTTATG CGATGCTATC TCCAGCTGCA CAGCTCCGAG TGTTTGAGGA ATTTGAGAAA GAAGAAAGAC TTGTGGTTGT GGCGACTAAT GTAGCGGAAA CTTCTCTGAC TATTCCCGGT ATAAAGTATG TGGTTGATAC AGGTCGGGTT AAAGTGAAGA ATTATGATTC TAAGACTGGT ATGGAAAGTT ATGAGGTAGA TTGGATTAGC CAAGCTTCGG CTAGTCAACG AGCTGGAAGA GCTGGACGAA CCGGACCTGG TCACTGTTAT CGTCTCTATT CATCTGCGGT TTTTAGCAAT ATATTTGAGG AATCTTCGCC TCCTGAAATC ACAAAAGTTC CTGTTGATGG AGTTGTTCTT ATCATGAAAT CTATGAACAT TCCAAAGGTT GAGAATTTCC CGTTTCCAAC TCCGCCTGAG CCATCAGCTA TTAGAGAAGC AGAACAATGC TTAAAAGCTT TAGAGGCTCT TGACAGCAAC GGACGGTTAA CACCATTAGG AAAGGCTATG TCTCACTATC CCATGAGTCC ACGTCACTCA AGAATGCTTC TCACAGTCAT CCAAATGCTA AAAGAGACCC GGAATTACTC ACGCGTGAAT CTCGTCCTTG GATATGCGGT TGCAGCAGTA GCCGCATTGA GCTTACCAAA CCCTTTGATA ATGGAGTTTG AAGGAGAGAA GAAAAATGAA TCCAAAGATG CTGACAAAAC CGTCAAGCAA GAAGATAAAC AACGGAGAAA GGATCGGAAA GAGAAAATCA AAGCTGCTCG GGACAGATTT TCCAACCCGA GCAGCGATGC TTTGACCGTA GCTTATGCAT TGCATTCCTT TGAGGTCTCA GAGAATGGCA TGGGCTTCTG CGAGGCGAAC GGTTTGCATT TAAAGACCAT GGACGAGATG TCTAAGCTCA AAGATCAGCT TTTGAGACTT GTTTTCAGCT GTTGTAAGCC CTCCGAAACC GACGACGGTT TCTCATGGAC TCATGGGACT ATACAAGACA TAGAGAAGTC ATGGAGAATC ACCACATTGT CTTCCTCAAA ATATCCTCTT CTACAGAACG AAGAAGAACT GTTAGGAGAA GCCATATGTG CGGGATGGGC AGACCGTGTA GCCAGAAAGA CCAGAGCGAC AGAATACCAA GCTTGTGCGG TTCAAGAACC TGTTTTCTTG CACCGTTGGT CGTCTCTCAT AAACACAGCT CCGGAGTTAT TGGTCTACAG CGAGCTCCTA CTCACCAACA GACCATACAT GCACGGAGCG ACTCGAGTGA AGCCGGAATG GCTGGTGAAG CACGCAAAGT CTCTCTGCGT GTTCTCTGCA CCACTCAAGG ACCCGAAACC ATATTACTCG AGTGAGGAGG ATAGAGCTTT GTGTTGGGTC GTCCCGAGTT TCGGTCCTCA TAATTGGGAG CTGCCGGCTC ACAGTGTGGC AATAACAGAG GATAGAGACC GAGCAGCGGC TTTCGGATGT GCTTTGCTTC AAGGAGAGGT ATTACCTTGT TTGAAAAGCG TTAGGACGTT GTTGGCTGGG AAACCTGAAA CGTTGTTGGA AAGAGAAGCT TGGGGTTTAG AAAGAGTTGG GAGTTTGGTG ATGGTTTTGA CAGAGAAGAA GATTGATAGT TTAGAGAGTT TGAGAAAGAG TTGGGAACAG AATCCGAAGG TGCTTTATTC AGAGATTGAA GTTTGGTTTC AGAAAAAGTT TCGTCATCGT GTCAAAGACC TTTGGCAGAC AATGCTAAAG GAGGCTCACG TTCAAAGAAG TCAGAGGAGA AGATAAGTGT CTTTAAATTA ATTTTT |
| Length | 3796 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_8: 2840625.. 2845104 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G33390.1 |
| Description | RNA helicase family protein |
| TAIR curator summary | Over-expression of this gene results in stem fasciation. The predicted amino acid sequence reveals the presence of two domains (DEXH-box or DEAD-box helicase and DUF1065 domain) and fragments of two more domains (HrpA domain and HA2 domain). |
| Alias | [ATFAS4][FAS4][FASCIATED STEM 4] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 6.48074 |
Ahg482091 | ARM repeat superfamily protein |
| 7.34847 |
Ahg476360 | pumilio 23 |
| 10.583 |
Ahg927596 | cell division cycle 48C |
| 13.4164 |
Ahg485847 | SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein |
| 17.2627 |
Ahg473739 | |
| 18.7083 |
Ahg483706 | shrunken seed protein (SSE1) |
| 19.975 |
Ahg486242 | D111/G-patch domain-containing protein |
| 20.1494 |
Ahg495232 | cleavage and polyadenylation specificity factor 160 |
| 25.593 |
Ahg337635 | Nuclear pore complex protein |
| 27.3861 |
Ahg491547 | |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|