| Annotation |
|---|
| Description | jgi|Araly1|950731|scaffold_802618.1 |
| Sequence |
ATCATCATCA TCATCATCAG AAGAAGAAAA ATGGTTGCGA GATCGGAGAT TAAGTCGACG GTGGATGTTA CGGCGGCGAA TTGTTTGATG CTTTTATCAA GAGTTGGACA AGAAAACGTT GACGGTGGAG ATCAAAAACG CGTTTTCACA TGTAAAACGT GTTTGAAGGA GTTTCATTCG TTTCAAGCCT TAGGAGGTCA CCGTGCGAGT CACAAGAAGC CTAATAACGA CACTTTGTCG TCTGGATTGG TGAAGAAGGT GAAAACTACG TCCCATCCTT GTCCCATATG TGGAGTGGAG TTTCCGATGG GACAAGCTTT GGGTGGACAC ATGAGGAGAC ACAGAAACGA AAGTGGGGCT GGCGGCGGCG CGTTGGTTAC ACGCGCTTTG TTGCCGGAGC CGACAGTGAC GACGTTGAAG AAATCTAGCA GTGGGAAGAG AGTGGCTTGT TTGGATCTGA GTCTAGGGAT GGTGGACAAT TTGAATCTCA AGTTGGAGCT TGGAAGAACA GTTTATTGAT TTATTTTTCT AAAATTTTCT |
| Length | 540 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_8: 18104057.. 18104596 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G59820.1 |
| Description | C2H2-type zinc finger family protein |
| TAIR curator summary | Encodes a zinc finger protein involved in high light and cold acclimation. Overexpression of this putative transcription factor increases the expression level of 9 cold-responsive genes and represses the expression level of 15 cold-responsive genes, including CBF genes. Also, lines overexpressing this gene exhibits a small but reproducible increase in freeze tolerance. Because of the repression of the CBF genes by the overexpression of this gene, the authors speculate that this gene may be involved in negative regulatory circuit of the CBF pathway. |
| Alias | [AtZAT12][RHL41][ZAT12][RESPONSIVE TO HIGH LIGHT 41] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1.73205 |
Ahg483040 | ortholog of sugar beet HS1 PRO-1 2 |
| 2.64575 |
Ahg496680 | CYS, MET, PRO, and GLY protein 2 |
| 4.89898 |
Ahg479472 | zinc-finger protein 2 |
| 5.2915 |
Ahg472978 | salt tolerance zinc finger |
| 5.65685 |
Ahg475300 | ARM repeat superfamily protein |
| 6.7082 |
Ahg481911 | Protein phosphatase 2C family protein |
| 8.12404 |
Ahg478868 | nine-cis-epoxycarotenoid dioxygenase 3 |
| 8.66025 |
Ahg482563 | plant U-box 23 |
| 10.7703 |
Ahg344762 | mitogen-activated protein kinase kinase kinase 14 |
| 11.7473 |
Ahg940069 | NDR1/HIN1-like 3 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|