| Annotation |
|---|
| Description | jgi|Araly1|311956|fgenesh1_pm.C_scaffold_1000736 |
| Sequence |
ATGGCAACGT CGACGGCGAT GGCGGAGGAT ACGAGCTTCG AGGAAGAGCA ACTAGTTTCC ATGACTCCTG ATGACATCCC TAGAGCTTCT CGTCTCTTAG CCAACGAGAT TCGCATCCTC AAGGAAGAAT TGCAGAGGGC AAACCTGGAT TTGGAATCAA AGATTAAGCT AAACAAACAG CTTCCTTACT TAGTCGGCAA TATCGTTGAG ATTCTTGAGA TGAGTCCAGA GGATGATGCA GAGGAATATG GAGCGAATAT CGATCTGGAC TCTCAGAGGA AGGGAAAATG CGTCGTTCTT AAAACATCAA CTCGCCAGAC CATCTTTCTC CCCGTTGTTG GACTTGTTGA TCCGGATACA TTGAAGCCTG GGGACTTAGT TGGAGTTAAC AAAGATAGCT ACTTGATTCT GGATACTTTG CCGTCTGAAT ATGATTCAAG AGTAAAAGCA ATGGAGGTTG ACGAAAAACC TACTGAAGAC TACAATGATA TAGGGGGACT AGAGAAGCAG GCTAAACTTG TTGAAGCCAT TGTGTTGCCA ATGACTCATA AAGAGCAGTT CGAAAAGTTG GGTATCCGGC CACCTAAAGG TGTACTCTTG TATGGTCCTC CTGGAACCGG AAAGACGTTG ATGGCCCGAG CTTGTGCAGC ACAGACAAAT GCAACTTTCC TGAAACTAGC AGGGCCACAA CTTATGTTCA TTGGAGATGG AGCAAAACTT GTCCGTGATG CTTTCCTGCT TGCAAAAGAG AAATCCCCTT GTATTATATT CATAGACGAG ATTGACGCAA TTGGGACAAA GCGTTTTGAT AGCGAAGTTA GTGGAGACCG TGAGGTGCAA AGGACAATGT TGGAGCTGCT CAACCAGCTG GATGGATTCA GCAGCGATGA TCGCATCAAG GTTATTGCAG CGACAAATCG TGCTGATATA CTAGATCCTG CCCTTATGCG TTCTGGTCGT TTGGATCGTA AAATCGGCAC CCCACTGAAG AAGCTAGAGG CAGGATCTTA CAGGAAAATG AATGTGAATG CAGACGTCAA TTTTGAAGAG CTTGCTCGAT CAACGGATGA TTTCAATGGA GCTCAACTCA AAGCAGTGTG TGTTGAAGCG GGTGTGCTTG CCCTGCGCCG GGATGCAACT GAGGTGAACC ATGAGGATTT CAATGAAGGT ATAATTCAAG TACAAGCCAA GAAGAAAGCA AGCTTAAATT ACTACGCCTA A |
| Length | 1221 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_1: 3308692.. 3311346 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G09100.1 |
| Description | 26S proteasome AAA-ATPase subunit RPT5B |
| TAIR curator summary | Encodes RPT5b (Regulatory Particle 5b), one of the six AAA-ATPases of the proteasome regulatory particle. Essential for gametophyte development. In Arabidopsis, the RPT5 subunit is encoded by two highly homologous genes, RPT5a and RPT5b. RPT5a and RPT5b show accession-dependent functional redundancy. In Wassilewskija (Ws) accession: mutant alleles of RPT5a displayed 50% pollen lethality, indicating that RPT5a is essential for male gametophyte development. In the Columbia (Col) accession, a rpt5a mutant allele did not display such a phenotype because the RPT5b Col allele complements the rpt5a defect in the male gametophyte, whereas the RPT5b Ws allele does not. Double rpt5a rpt5b mutants in Col background showed a complete male and female gametophyte lethal phenotype. |
| Alias | [RPT5B][26S proteasome AAA-ATPase subunit RPT5B] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 20.4206 |
Ahg897183 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein |
| 23.7487 |
Ahg351441 | Lipase class 3-related protein |
| 28.9655 |
Ahg347817 | Leucine-rich repeat protein kinase family protein |
| 33.9411 |
Ahg933779 | Domain of unknown function (DUF313) |
| 34.6266 |
Ahg931964 | DNA-binding storekeeper protein-related transcriptional regulator |
| 34.9857 |
Ahg918583 | Auxin efflux carrier family protein |
| 39.2428 |
Ahg485404 | hydroxyproline-rich glycoprotein family protein |
| 46 |
Ahg937502 | Leucine-rich repeat protein kinase family protein |
| 46.6154 |
Ahg479457 | Granulin repeat cysteine protease family protein |
| 51.0294 |
Ahg914883 | Disease resistance protein (TIR-NBS-LRR class) family |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
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| The four seasons |
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| Growth Chamber expression |
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