Detail


ID : Ahg312231

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|312231|fgenesh1_pm.C_scaffold_1001011
Sequence
ATGTTGTTCC CTCCTCTCCG TTCCCTCTTT TTCCTCACCC TCTTGCTCTC CTCCTTTTGT TTCTTACAGA TCAAAGCAGA TCACGGCGAT GAAAGCGACT TAGACAGTCA TATCAAAGTA GACAAACGTC TCAAGTTCGA GAACCCGAAG CTACGTCAAG CCTACATTGC TCTCCAATCA TGGAAACAAG CAATCTTCTC TGATCCTTTC AACTTTACAG CTAATTGGAA CGGCTCAGAT GTTTGCTCCT ACAATGGAAT CTATTGTGCT CCTTCACCTT CATACCCGAA AACCCGAGTC GTTGCTGGCA TTGACCTCAA CCACGCTGAC ATGGCTGGTT ACTTGGCTTC CGAGCTTGGT CTCCTCTCCG ATCTCGCTCT ATTCCACATT AACTCAAACC GTTTCTGCGG TGAAGTCCCT CTCACGTTTA ACCGCATGAA GCTTCTTTAC GAGCTTGATC TTAGTAACAA CCGATTCGTC GGTAAGTTCC CTAAGGTTGT CCTCTCGTTG CCTTCCCTCA AATTCTTGGA TCTCCGCTAC AACGAGTTTG AAGGCAAGAT CCCATCAAAG CTCTTCGATA GAGAGCTCGA TGCTATATTC TTGAACCATA ACCGGTTCCG GTTCGGGATT CCCAAGAACA TGGGGAATTC CCCTGTTTCC GCTCTGGTTC TTGCGGACAA TAATCTGGGA GGATGCATAC CGGGAAGTAT CGGTCAAATG GGGAAGACAC TCAACGAGCT AATCCTCTCC AACGACAACT TAACCGGTTG TTTACCTCCT CAGATCGGAA ACCTCAAGAA AGTGACGGTT TTCGACATCA GTTCAAACCG TCTACAAGGT CCATTACCAT CTAGCATCGG AAACATGAAG AGCTTAGAAG AGCTTCACGT GGCTAACAAT GGCTTCACAG GAGTTATTCC TCCAAGTATC TGCCAGCTTT CTAATCTTGA GAACTTCACT TACTCTTCCA ACTTCTTCTC CGGTCGTCCT CCTGTGTGCG CAGCTAGTTC GTTGGCCGAT GCTGTGGTGA ACGGTACCAT GAACTGTCTA ACCGGTTTGG CTCGTCAAAG ATCGGCTAAA CATTTGGATG TTACAACATC TTCTCTCCAC CACCACCAAC GTTCAAGATG TCACCTGAGG ACCGGAAACT TCCTCCTGGA TTTTAATACA CAAAGCCCGC CACCACCATC ACCGGTATAC TATCCACCAG TAACACAAAG CCCTCCACCA CCATCGCCAG TATACTACCC ACCGGTGACA AACAGTCCAC CACCACAATC ACCGGTATAC TATCCGCCAG AAACATACAG TCCACCACCA CCGTCACCGG TTTACTATCC GTGGGAAACA CCAAGTCCTC CACCACCATC ACCCGTTTAC TATCCCCCAG TAACACCAAG TCCTCCACCA CCATCACCCG TTTACTATCC CCCAGTAACA CCAAGCCCTC CACCACCATC ACCGGTATAT TATCCATCGG AAACACCAAG TCCTCCACCA CCCACTGAGT ACTATTATTC ACCAAGCCAG TCTCCGCCAC CAACAAAACC ATGTAACGAA GGCCATCCAC CACAAGCAAC ACCAAGTTAC GAACCAACTC CTGAATATAC ATACTCATCA TCACCACCAC CATCTCCTCC GTCCTACTCT GACTCGTTTG TTCCACCGAT TCCAAGTGTC TCATATGATG CATCTCCTCC TCCTCCTCCT CCGTCTTACT ACTAG
Length1725
Protein Sequence
Protein Residue
Map Locationscaffold_1: 4626383.. 4628596
Download Sequence
A.thaliana
AGI-codeAT1G12040.1
Descriptionleucine-rich repeat/extensin 1
TAIR curator summaryencodes a a chimeric leucine-rich repeat/extensin protein that regulates root hair morphogenesis and elongation. Null mutants develop root hairs that frequently abort, swell, or branch. Gene is expressed in root hair cells and protein is specifically localized in the wall of the hair proper.
Alias[LRX1][leucine-rich repeat/extensin 1]
Gene coexpression
MR
MR Locus Description
19.799 Ahg327310 Galactose oxidase/kelch repeat superfamily protein
20.4695 Ahg338146 KNOX/ELK homeobox transcription factor
23.8328 Ahg359114 transposable element gene
29.3428 Ahg338229
45.607 Ahg945592
48.7442 Ahg473700 transposable element gene
49.0816 Ahg949167
57.1752 Ahg950383 Auxin efflux carrier family protein
57.8273 Ahg916294
59.2199 Ahg895168 NAC domain containing protein 70
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression