| Annotation |
|---|
| Description | jgi|Araly1|316771|fgenesh1_pm.C_scaffold_2001804 |
| Sequence |
ATGAATTTCC ATCAGGTCCT CTTTCTCATT CTTCTTATTT TTCTTGTTGA TTTATCAGAT TACAATGTCT TAGCAGATAA CACCGATGCT GGTTACAAGA ACACGTCAAA GTGTAACATT TACCAAGGAC GTTGGATTTA TGACAATTCT TCTAATCCTC TTTATGGAAC ATCGACTTGC CCATTCATCG GATTGGATTG CCAGAAGTTT GGTCGGCCGG ACAAGAACTA CCTCCATTAC CGATGGCAAC CCACCGGATG CGACATCCCA AGATTCGACG GACGAGATTT CTTGAAGAGA TTCAAAGGGA AAAAAATACT GTTTGTGGGA GATTCACTAA GCAATAATAT GTGGGTGTCT CTAAGTTGCA TGCTTCACGC TGCCGTTCCT AACGCTAAGT ACACCTTCCA ACTCAACAAA CGCCTCTCTA CTTTCACCAT TCCGGAATAT GGAATATCAG TAAATTTCCT GAAAAATGGG TTCCTGGTGG ATTTAGTAGC GGACAAAACA AGAGGGTTGA TTCTGAAACT AGATTCGATC AGTTCCGGAA ATCAATGGTT GGGATCAGAT GTTGCCATCT TTAACACATT CCACTGGTGG TCTCACACCG GTCGTGCCAA AACATGGGAT TATTTTCAAA CGGGAGACCA AATAGTGAAA GAGATGAATA GAATGGAAGC TTTCAAGATT GCTTTAACAA CTTGGGCTAA GTGGATTGAT CACAACATTG ATCCTTCAAA AACTAGGGTT TTCTATCAAG GCGTTTCTCC CGTTCACTTA ATTGGTGGTG AATGGGGTAA ACCGGGGAAG ACTTGCTTGG GCGAGACGGA ACCAGTGAAA GGACCAAGTT ACTGCGGACA ACCTAATGAA GGTGAAGCTA TAGTGAGAAG TGTGATCGGA GGGATGGCTA AACCGGTGGA GCTCCTTGAT GTGACGAATA TGACGGAGAT GAGGAAGGAC GGTCACCCTT CGATCTATGC CGGTGGAGGA AATCGCTTAA ACGACTGCAG CCATTGGTGC CTCCCTGGAG TCCCAGACGC TTGGAACCAG CTCCTTTATA CGGCTCTTGT CCGCCACTAG |
| Length | 1080 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_2: 17287712.. 17289537 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G78710.1 |
| Description | TRICHOME BIREFRINGENCE-LIKE 42 |
| TAIR curator summary | Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication). |
| Alias | [TBL42][TRICHOME BIREFRINGENCE-LIKE 42] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 16.7033 |
Ahg328856 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
| 20.6155 |
Ahg325356 | Pectin lyase-like superfamily protein |
| 30.8221 |
Ahg897485 | |
| 32.1248 |
Ahg941587 | beta-1,3-glucanase 5 |
| 37.5233 |
Ahg941356 | ARM repeat superfamily protein |
| 52.2685 |
Ahg312489 | Polyketide cyclase/dehydrase and lipid transport superfamily protein |
| 58.5833 |
Ahg486663 | Ca2+dependent plant phosphoribosyltransferase family protein |
| 60.0999 |
Ahg923265 | |
| 62.482 |
Ahg482450 | hydroxyproline-rich glycoprotein family protein |
| 63.4429 |
Ahg892007 | |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
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| The four seasons |
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| Growth Chamber expression |
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