| Annotation |
|---|
| Description | jgi|Araly1|342596|fgenesh1_pg.C_scaffold_3002359 |
| Sequence |
ATGGATATGA CTACTTGTGT TGCTAGAAGA ACTCGTTCAA GGACTGAATC TTACTTGAAT TCGATTCTCA ATAGATCAAA GGGGATTACT GGAGAAGAGG ATTCGTTAAA TTCGAGGACG GAGAAGAGAA GAGTGAACAT GCGTAATGCT TGTTCACCGT CTCCGAGGAA GAAGAAACGA CGGCGGAGTA AGGTGGGTGA GGATGATGAC GACGACGATG TTGAGTTTAT CAGAACTGAT TATCCAGAAG GTAAGCGTGA TGGTGAGAAT GTTGGTTCTA CTTCTGGGAA TTTTGAATCG AAATCGCTTG ATTGTTCTGA TTTTGATGTG GATGATGGTA ACTTGGGAGG TGAAGAGAGA ATTTCTAATT TTAACCCTTT ATCTCCGGAT GATGATGTTG TTTTTGTTAG AACTGTTTTG AGAGAGAATG ATCATGTTGA AGAGGATGAT AATGTTGGTT CTGCTTCGGT GATTTCTCCT AGGGTTTGCG ATTTTGATGT GGATGGTGCT GATTTGAGGG GTGAGGAGAA AACTTCTACT TTGGATCATT TATCTCCGGA TGATGATGAT GATGTTGTTT TTGTTGGAAC TGTTCCGGGA GATGTTGAGG ATGGCAATGT TGGTTCTGGG GTTTGTGATA TTCTTTTGGA TGATGCTAAT TTGAGGGGTG AGGAGAAGAC TTATGAGTCT GATGAGGTTG TGAGTCTAAG TTTTAATTCT GATGACGAGG AATGTGGGAC TGATTCTGGA GAGGAAGTTA GTGGCGAAGA TAGAGATTCT GGTGAGATTG ATATGAATGA AGATGCTAAT GACCCATCTT ATAACATGGA GGAAAGTTCA GATCCTTCTT GTGAGGAGAG CTCTGATAGT GATTTCGTTC GTTCTGAGGA TGAAGAGGGT GGTACCGGAG ACATTGCTAA AGGCGAAAAG AACCCAAGTG AAAAAGTATA CTACCAAAAG AAGTCGAGGA GTTTTCGTAG GAAGCATAAC TTGGAAGTAA TTAACCTGCT AGCTAAATCT ATTTGGGAGA GCAAAGACGT TTTCAAGGAA GACATTTGCT CCGGGGACAA AATGGCAGAG GTTGATTCTA GAGAAGATGG TATAAATAGG GAGAGCTCAA GTGAAAAGGT AAATGAACAG GGGAAACCAA GGGAACCGAG GAGTTTCCAT AGGGCGAGGG AGAAGAACCA CTTGAATGGT GAGAGTTTTT ATGGTGGCGA AAATCTATGT GATGGAGAAG AGACAATACA CTACTCGACA GAAGATTCAC CTCCATTAAA CTTGAGATTT GGCTGCGAGG AGCCTGTGCT TATCGAGAAA ACAGAAGAGG AGAAAGAATT AGACAGCTTG TGGGAAGATA TGGCCGTTGC TCTAACATTG GAAGGAATGA ACTCATCTAC TCCTGCTAAA AATGGAGATA AGCTATGTAG CAAAGGGACG CACGACTTTG TCCTGGATGA GGAAATCGGT TTGAAATGCC TCCACTGTTC GTATGTGGCT GTCGAGATCA AAAACATCTC ACCAGCTATG GTCAAGTATC GTCCTAGTGT TAATGACAAT AAAAAATGTA GTGATAAAAA GGGTGACCCT TTACCTAACA GGCTTGAGTT TGATGCTTCA GATCCCAGCA GTCATGACAC CCCTTTGGAG AAGACAGAAG GAACTGTCTG GCGATACGTC CCTGGCATCA AAGATACTTT GTACCCACAC CAACAAGAAG GCTTTGAATT TATTTGGAAG AACTTAGCCG GGACAACAAA ACTTAATGAG TTGAACAGCG TAGGGGTTAA GGGAAGTGGC GGATGCATTA TTTCGCATAA GGCTGGAACT GGTAAGACAC GCTTGACCAT CGTTTTTCTT CAGTCATACT TAGAACGGTT TCCAGATAGT CATCCTATGG TCATAGCTCC TGCAAATCTA ATGCGTACGT GGGAAGAAGA ATTCAGGAAA TGGAACGCAA ATATTCCATT TTATAATATG AATAGTCCGC AGTTCTCAGG GCATGAGGAC GTTGAAGCTG TCTCATGTTT AGAGGGAGAT AGGCATCATA ATTCCATCCG TATGGTTAAG CTAGTTTCGT GGTGGAAGCA GAAAAGCATT CTTGGAGTTA GCTACCCTCT GTATGAGAAG CTCGCAACAA ATAAGAACGC TGAAGGAATG CAAGTGTTTA GAAGGATGTT GGTAGAATTG CCGGGGTTGC TGGTCCTTGA CGAGGGCCAC ACCCCGAGAA ACCAGAATAG TCTCATTTGG AAAGTGCTTA CTGAAGTCAG AACAGAAAAG CGTATCATTC TTTCAGGGAC ACTGTTCCAG AATAATTTCA AGGAGCTCTC TAACGTCTTA TGCCTGGCAA GACCAGCTTG TAAAGATACG ATTTCGTCGA GGCTACATGA ACTTATCAAG TGCAGCCAAG AAGGAGAACA CGGAAGGGTG AATGAAGAAA ATAGAATTGT GGATCTTAAG GCTGTGATTG CCCCTTTTGT GCATGTCCAC GAAGGAGACA TTCTTCAAGA AAGCCTTCTA GGTCTAAGAG ACTGTGTTCT GGTGTTGAAC CCGCCTTTTC AACAGAAGAA AATTCTGGAC AGAATTGACA CTTCTCAAAA CACATTTGAA TTTGAGCACA AGCTTTCAGC TGTTTCAGTA CACCCATCTC TGTATTTGTG CTGTAATCCG ACGAAGAAGG AAAACTTGGT TATTGGGCCA GCAACATTAG AAACTCTGAA GAAGCTTAGA CTTAAGTACA AGGAAGGTGT GAAAACAAAG TTCCTTATCG ACTTCATCCG CATCAGTGGA ACCATGAAAG AGAAAGTGTT GGTGTATAGC CAATACATTG ACACTCTAAA GCTGATCATG GAGCAGCTCA GTTTAGTATT TAGCTGGAAA GAAGGGGAAG AAATTCTCTT TATGCATGGT AAAGTTGAAC AAAGAGACAG GCAGCATCTG ATCGACAACT TCAACAAACC AGACAGTGGA TCTAAAGTTC TACTGGCATC AACAAAAGCA TGTTCCGAGG GTATCAGTCT TGTTGGCGCT TCAAGAGTTG TGATTCTTGA TGTTGTTTGG AACCCTTCTG TTGAAAGCCA AGCCATAAGT CGGGCTTTCA GACTTGGTCA AAAGCGTGCT GTGTTCATTT ACCATCTCAT GGTGAAAGAC ACATCTGAGT GGAACAAGTA CTGTAAGCAA AGTGAGAAAC ATCGCATATC CGAACTGGTC TTCTCTTCTA CCAATGAGAA GGATAAGCCG ATCAACAACG AAGTTGATTC CGAAGATAGA ATCCTCGACG AGATGGTTCG ACACGAGAAG CTGAAACACA TCTTTGAGAA GATACTTTAT CACCCAAAAG AATCTGACAT GTTTACCAGC TTCTTCTGA |
| Length | 3369 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_3: 10995064.. 10998667 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G24340.1 |
| Description | chromatin remodeling 40 |
| TAIR curator summary | |
| Alias | [CHR40][chromatin remodeling 40] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 21.0713 |
Ahg912417 | DNA binding |
| 32.45 |
Ahg472719 | galactosyltransferase1 |
| 33.9264 |
Ahg490065 | origin of replication complex 1B |
| 46.6583 |
Ahg478549 | Jojoba acyl CoA reductase-related male sterility protein |
| 49.8799 |
Ahg940242 | SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein |
| 61.7576 |
Ahg895151 | Protein of Unknown Function (DUF239) |
| 68.5857 |
Ahg490446 | RING/U-box superfamily protein |
| 74.3505 |
Ahg472471 | methyl-CPG-binding domain 8 |
| 80.9938 |
Ahg918487 | SAP domain-containing protein |
| 82.7345 |
Ahg492102 | |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|