Detail



ID : Ahg343373

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|343373|fgenesh1_pg.C_scaffold_3003136
Sequence
ATGCTTTTGG CATCTTCTCG ATATGTGCCA TTGACAAGAA GATTATGGCT TCCTCAACTA CGTTCCTCTT CTTTGCTTTC TGTACCCAGC GATGATCATA TCGTCCGTCT CATTCTAGAC CAGAAATCAG CTTCTGGAGC TTTGGAAACT TTTCGATGGG CTTCAACTTT TCCTGGGTTT ATCCATTCTC GTTCCACTTA CCGTGCTCTG TTTTATAAAC TTTGTGTTTT CCGTCGTTTT GATACTGTCT ACCAACTGCT CGACGAAATG CCTGAGTCAA CCGGTTTGCC TCCGGATGAT GCTATCTTTG TAACTATCAT TAGAGGGTTT GGGCGTGCTC GATTGACCAA ACGTGTGATT AGTGTTGTTG ATCTGGTTTC GAAATTTGGG ATCAAACCAT CTTTGAAAGT TTTCAATTCG ATCTTGGATG TTTTGGTTAA GGAAGACATT GACATAGCTA GAGAGTTTTT CAGAAGGAAG ATGATGGCTA GTGGGATTCA TGGTGATGAG TACACATATG GGATTTTGAT GAAAGGGCTT TGTTTAACGA ATAGGATTGG TGATGGTTTT AAGCTCCTTC AGATCATGAA GACAAGCGGT GTGGCTCCAA ACACTGTGGT TTATAACACC TTGCTTCATG CTCTTTGTAA GAATGGGAAA GTTGGGAGAG CTAGGAGTTT AATGAGTGAA ATGAAGGAAC CAAATGATGT AACTTTCAAC ATCTTGATAT CTGCTTACTG CAACGAGCAG AAGTTGATTC AGTCGATGGT GTTGCTGGAG AAATGTTTTA GTTTGGGTCT TGTTCCGGAT GTTGTGACGG TAACTAAGGT GATGGAAGTG CTCTGCAATG AAGGCCGTGT GTCTGAGGCA CTCGAGGTTT TAGAGAGAGT GGAAAGCAAA GGAGGTAAAG TCGATGTTGT AGCTTGTAAC ACCTTGGTTA AAGGGTATTG TGCGGTAGGG AAAATGAGAG TTGCTCAACG GTTCTTCAAA GAGATGGAGA GAAAAGGTTA CTTGCCGAAT GTGGAAACAT ATAGTTTGTT GATTGCTGGA TTTTGCGATG TTGGAATGTT GGATTCAGCT CTGGACACTT TCAATGATAT GAAAACAGAT GCGATTAGAT GGAACTTTGC TACATTTAAC ACGTTGATCA GAGGGCTTTC AGTAAGAGGG AGGACAGACG ATGGTATAAA GATATTAGAA CTGATGCAGG ACAGCGAAAC CGTTCATGGG GCCAGAATCG ATCCGTACAA CAGTGTTATT TATGGCTTTT ACAAGGAAAA CCGGTGGGAG GACGCTCTCG AATTCCTGTT AAAGATGGAG AAACTTTTTC CAAGGGCAGT TGACAGGAGC TTCAAGTTGA TTAGTTTATG CGAGAAAGGC GGTATGGATG ATGTAAAGAC GGCCTATGAT CAGATGACTG GAGAAGGAGG AGTTCCTAGT GTTATAGTTT CCCATTGCTT GATTCATAGA TACAGCCAAG AAGGATACAT GGAAGAAACA CTTGAGCTTA TTAACGACAT GGTCACCAGA GGCTATTTGC CTCGATCATC AACATTCAAT GCTGTGATTA TCGGGTTCTG TAAGGAAGAT AAAGTCATGA ATGGTATCAA GTTTGTGGAA GACATGGCTG AGAGAGGTTG CGTTCCTGAT AGAGAGAGCT ACAATCCGTT GCTCGAAGAA TTGTGCGTGA AGGGTGATTT TCAGAAGGCT TGGTTGCTTT TGTCACTAAT GGTGGAGAAG AGTATTGTAC CTGATTCTTC TATGTGGAGT TCACTGATGT TTTGTCTCAG CCAGAAAACC GCAATCCACT TGAACACCTC ATTGCAGGAC ATAATCGAAA ACAGAGATAT GTCGTGTTCA TCCTCATCTG GATCAGATGA AGACGATGAG GGTTTCGATG CTTACCGTAA AGGTGGATAT CACGCCGTTA GAATCGGAGA CCAGTTTGCC GGTGGCCGTT ACATTGCTCA GAGAAAGCTT GGTTGGGGCC AATTCTCCAC CGTTTGGCTT GCCTATGATA CTCGCACCTC TAATTATGTT GCTTTGAAGA TTCAGAAGAG CGCTTTACAA TTTGCTCAAG CTGCACTTCA CGAAATCGAA CTTCTTCAAG CTGCTGCTGA TGGGGATCCT GGAAATACCA AATGTGTTGT TCGTCTTATT GATGACTTCA AGCACGCAGG TCCCAATGGG CAGCATTTAT GCATGGTGCT TGAGTTTCTT GGCGATAGCT TGCTGCGTTT GATCAAATAC AACCGTTATA AAGGGATGGA GTTGAGTAAA GTGCGGGAGA TATGCAAATG TATACTGACT GGTCTAGATT ATTTGCACCG TGAACTTGGT ATGATTCACT CCGACTTAAA ACCCGAAAAC ATTCTTCTTT GTTCCACCAT TGACCCTGCC AAGGATCCCA TCAGATCCGG ACTAACACCA ATACTAGAAA AGCCTGAGGG TAACCAAAAC GGTACATCAA CAATGAATCT GATTGAGAAG AAGTTGAAGA GGAGAGCGAA AAAGGCGGCT GCTAAAATAT CAGGAAGAAG AGTTTCGATA GTAGGTTTAA GTGAAACACC GACAAAGAAC AAGAGAAATT TGGATGGGAT TGATATGAGA TGCAAAGTTG TCGACTTTGG GAACGGGTGT TGGGCTGATA AGAAATTTGC AGAAGAAATA CAAACAAGAC AGTACAGAGC TCCTGAAGTA ATACTTCAGT CAGGTTACTC TTACTCTGTT GATATGTGGT CTTTCGCGTG TACTGCTTTC GAGCTTGCTA CAGGTGATAT GCTTTTCGCT CCAAAAGAGG GTAATGGTTA CGGAGAAGAC GAGGACCACC TTGCTCTTAT GATGGAACTC TTAGGAAAAA TGCCTCGAAA GATTGCCATT GGAGGTGCGA GATCAAAGGA TTACTTTGAC AGACACGGCG ACTTGAAGAG GATCCGGAGA TTAAAATACT GGCCACTCGA CCGTTTACTG ATTGATAAAT ACAAGCTTCC AGAAGCAGAA TCACGGGAAT TTGCGGAATT TCTCTGCCCG ATTATGGATT TTGCACCTGA GAAACGACCA ACTGCTCAAC AATGTCTGCA ACATCCATGG TTGAATCTCA GGACACAGAA CAATGAAGAT CAAATAGAAG GTCAGATGAG TAACATGCAG ATCAAAGGTT CATGTTCTTG A 
Length3171
Protein Sequence
Protein Residue
Map Locationscaffold_3: 20873271.. 20877670
Download Sequence
A.thaliana
AGI-codeAT2G17525.1
DescriptionPentatricopeptide repeat (PPR) superfamily protein
TAIR curator summary
Alias
Gene coexpression
MR
MR Locus Description
14.5602 Ahg913551 transposable element gene
44.5084 Ahg470983
52.4976 Ahg892007
62.5939 Ahg950561 Protein of unknown function (DUF640)
84.0595 Ahg356437 Protein of unknown function (DUF1264)
85.9069 Ahg481562 non-specific phospholipase C2
92.0109 Ahg489241 DOMAIN OF UNKNOWN FUNCTION 724 10
93.5949 Ahg888149
95 Ahg332172 zinc finger protein-related
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression