| Annotation |
|---|
| Description | jgi|Araly1|343537|fgenesh1_pg.C_scaffold_3003300 |
| Sequence |
ATGTTTGTTT TTGCTAAGAA GCTTAAGAGT CTCTCAGCTT CGAAGCACGA GCGGAGCGAG GCAAACCAAA AATCCAGTTC GCTTCGTTGC CATCTTCAAT TCTTGTTCAT CTTCCTCAAA TTCAGCTCGA AAGTTCCAAC CTTTACTTCT TTAATGGAGA TTCTCCATCC CGATCAAGCA ACCTCAAACG GGTACTACAA GAATGTGCAT AAAAGAAAGC AAAATCAAGT TGATGATGGA CTTTGTTCCG ATTCTGAAGC AAAGCGGTTA AAGAGTTCAT CCAAAGTGAT TGATTACTCT AACCCATTTG CAATTAGTAA CATGCTTGAA GCATTAGATG GTGGTAAATT TGGGAGTGTT ACTAAAGAGT TGCAAGAGAT AGCTGATATG AGGATGGATT TGGTTAAGCG TTGTATTTGG TTATATCCAT CGTTAGCGTA TACCGAGTTT GAAGATGAGA AGACGATGAT GAGTTTCGAT AATCAACAGG TTGTGGAAGG TGGTGTTATT AATTTGGATG ATGATGATGA TGATGATGAT GATGTTTCGA ATAAAGCTAT TTGTGTTGTT CCTTCGTCTG AGATTGTGGT TATTGATTCT GATGATGAAG ACAATGAGAG GCAGAGGTCT ACGTATCAGT TTCAGTCTAC TCTTGTACAG CTTCAGAAGA ATCAAGGGGA TGTGACTCCA GTAACACCGC AATTCACTTT TGAGGAGGTC GATTTAGGGA GGAGCAAGGA GATGATGCCT TCTGTAATTA AGGCCATGGT GGAGGGACAA ACAAGTAGAG GCAAAGTTGT TGCCATAGAA AATGGTGTGG CTAACGAAAA GGGTGTCTAC GTGGGGGTTG AGGAGGATGA CAGTGATAAT GAGTCTGAAG CAGCAGATGA AGATCTTGGT AATATCTGGA ATGAAATGGC CATGTCAATA GAGTGTTCCA AGGATATAGC ATGGGAGACT TCGCATAAGC AAAAGGCAGA TGTAGTGGAA GACTGTGAGC ACTCATTCAT TCTAAAGGAT GATATGGGTT ATGTTTGCCG TGTCTGCGGA GTTATTGAGA AAAGTATACT AGAGATAATT GATGTGCAAT TCACTAAAGC AAAACGAAAC ACAAGAACAT ATGCCTCTGA AACTAGAAAT AAAAGGTTTG GCGAATCTGA TGCTGAACTT AAGTTTTCTG AAGAAGGGCT TATGATAGGT GGACTTGCTG CTCATCCAAC GCATGCTGAC AACATGAAGC CTCATCAAAT TGAGGGATTC CAGTTCCTTT GCAGCAATTT AGTGGCAGAT GATCCTGGTG GTTGTATCAT GGCTCATGCT CCAGGTTCTG GAAAAACCTT CATGATCATC AGTTTTATGC AGAGCTTCCT TGCTAAGTAT CCTCAGGCTA AGCCACTGGT TGTGCTTCCA AAGGGGATTT TGTCTACTTG GAAAAAAGAG TTCCTTAGAT GGCAAGTTGA GGACATACCA CTGCTTGATT TCTACAGTGC TAGAGCAGAA AACCGAGCAC AGCAGCTGGC TATCTTGAGA AAATGGATGG AGAAGAAGAG TATCTTATTT CTTGGGTACA AGCAGTTCTC AACTATTGTG TGTGATGATA CAAGTACCGA CTCACTTTCT TGCCAGGAGA TACTGCTCAA AGTACCTTCG ATCCTCATTT TGGATGAAGG ACACACTCCA AGGAATGAGG ACACAAATGT ATTGCAGTCC CTTGCCCAAG TCCAAACACC AAGAAAAGTT GTCCTCTCAG GAACGCTTTA TCAGAACCAT GTAAAGGAGG TTTTCAACAT TTTGAACCTC GTTCGACCCA AATTCCTCAA ACTGGATACC TCCAAGTCTA TCGTGAAGAG GATATTGAGT TATGCTCCTA TATCTGATGT AAGGTCACAT ATGGGAAACA ATTCAGATGT GTCTTCGGCC TTCAATGAAA TTGTGGAGTA CACACTGCAG AAGAGCGAGG ATTTCACGGT GAAAATTAAT GTAATCCAAG ATTTGCGGGA GATGACAAAG AAAGTGCTTC ATTACTATAA AGGAGATTTC CTAGATGAGC TTCCTGGACT TGCTGATTTC ACTGTGGTTC TTAATCTGTC TCCAAGGCAG TTGAACGAAG TGAAGAAGTT AAGACGTGAG AAGAGAAAAT TTAAGGTTTC GGCTGTGGGA AGTGCAATTT ACCTTCACCG CGAAGCTGAA ACCATCGGGC GGGCTTTTCG ACCCGGACAA ACAAAGAAGG TGCATGCATA CAGATTGATT GCTGGGTCAT CACCTGAGGA GGAGGATCAC AACACTTGCT TCAAAAAGGA AGTCATCTCA AAGATGTGGT TCGAGTGGAA CGAGTACTGC GGATACCGAA ACTTTGAGGT AGAGACAATT GATGTGGATG ATGCTGATGA TATGTTCCTT GAAAGTCCTA CCTTAAGAGA AGACATAAGA GTTCTCTACA AAAGGTAA |
| Length | 2448 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_3: 21965259.. 21969465 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT2G16390.1 |
| Description | SNF2 domain-containing protein / helicase domain-containing protein |
| TAIR curator summary | Putative chromatin remodeling protein, member of a plant-specific subfamily of SWI2/SNF2-like proteins. Mutations nearly eliminate non-CpG methylation at a target promoter but do not affect rDNA or centromere methylation. Cooperates with PolIVb to facilitate RNA-directed de novo methylation and silencing of homologous DNA. Endogenous targets include intergenic regions near retrotransposon LTRs or short RNA encoding sequences that might epigenetically regulate adjacent genes. May be used to establish a basal yet reversible level of silencing in euchromatin. |
| Alias | [CHR35][DMS1][DRD1][DEFECTIVE IN MERISTEM SILENCING 1][DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 11.7898 |
Ahg951859 | Alpha amylase family protein |
| 14.8324 |
Ahg478034 | GPI transamidase component Gpi16 subunit family protein |
| 20.9762 |
Ahg343169 | endonucleases |
| 31.225 |
Ahg918823 | Protein of unknown function (DUF3133) |
| 33.1059 |
Ahg923061 | NC domain-containing protein-related |
| 38.3406 |
Ahg481885 | anthranilate synthase 2 |
| 40.5586 |
Ahg481696 | |
| 42.9185 |
Ahg487536 | Protein kinase superfamily protein |
| 43.9545 |
Ahg487234 | Protein of unknown function DUF455 |
| 44.0227 |
Ahg888078 | Protein of unknown function (DUF3414) |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|