| Annotation |
|---|
| Description | jgi|Araly1|470353|fgenesh2_kg.1__307__AT1G03790.1 |
| Sequence |
ACACACATCT CTCAAAACCA AAACACATAC AAGCAAAAAA ACAAGTTATA TATTATCATG GATGTCGTTT GTACGGAACA TCATATGAGG AAACCAACGG TGGAGATTCC TCCGAGAAAG CTTCTTTTAT CTTCCAAGAG TTTTTCTTCT GATTCTTCTT CCCCTCGTTC GCCGCGTAAA CATAACTGGA ACAAAAGCAA CAAGATCACA TCTGAACATG AAGAAGACAA CTTCAACAAC GAAGACAACA ACAAGGAGAT TAAAGAGTAC TGTTATGACT CCGACTCTGA TGATCCTTAC GCAAGTGATC ATTTCCGGAT GTTCGAATTC AAGATCCGTC GTTGCACTCG TAGCCGAAGC CACGATTGGA CTGATTGTCC TTTTGCTCAT CCCGGTGAAA AAGCTCGCCG TCGTGATCCT CGTCGCTTTC AATACTCCGG TGAGGTTTGT CCCGAGTTTC GTCGTGGTGG TGATTGTAGC CGTGGAGATG ATTGTGAGTT TGCTCATGGA GTCTTTGAGT GTTGGCTCCA TCCTATTCGT TACCGTACTG AAGCTTGTAA AGATGGTAAG CACTGTAAAA GGAAAGTCTG TTTCTTTGCT CATTCGCCAC GTCAGCTTAG GGTTCTTCCT CCGGAAAACG TTTCCGGCGG CTCAGCGTCG CCGTCTCCTG CCGCGAAGAA TCCGTGTTGT TTGTTTTGTA GCAGCTCTCC CACGAGCACT CTTTTGGGTA ATTTGTCTCA TCTTTCTCGA TCTCCGTCTC TGTCTCCACC TGTGTCTCCG GCTCATAAAG CCGCTGCTTT TTCACGGTTG AGGAACCGCG CCGCATCTGC CGTTTCTGCC GCTGCAGCCG CTGGTTCAGT TAACTATAAA GACGTTTTGA GCGAGCTGGT GAATTCGTTG GATTCCATGA GCTTAGCGGA AGCGCTGCAG GCGAGTTCTT CGTCACCGGT TACAACTCCG GTTTCCGCTG CAGCTGCCGC GTTTGCCTCG TCCTGCGGTT TGAGCAATCA GCGTCTCCAT CTCCAAAACT TACAACCAAG TAGTCCTTTG CAATTTGCTC TTTCGCCTTC CACTCCAAGC TACCTAACTA ACTCACCTCA GGCGAACTTC TTTAGCGATG ATTTCACTCC TCGCCGAAGA CAGATGAACG ATTTCACGGC GATGGCAGCG GTTAGGGAGA AGACTAGCAT TGAGGATGGT TCTTGTGGTG ACCCTGATCT TGGATGGGTC AATGATCTCC TGACTTGATG GATTGACGGT GGAGAGAAGA CGGGAGGGAG ATCTGACTTT GAGAATGTAA ATTTCGGGGG AGGAGTTTTA ATCACATTCA TGAATCATGG GAGAATAGTC GGTTCGTAAC GGTTTGGTCA ATGCATGGAG AGATTGTTGT TCAAATTTGT TTTGAAGATT TTTTTTTTTA GCTAATTCAG AAGTGTCTTG TGTATTGTCG TTTATTTTTT AGAATTTTCT CTGTCTGATG GGATTTTTAC CAAATAATAT GTTGAACTTG TAATATCTTG TGGACTCGGA TTGTGCAATG TTTCACCAAT TCTATAAATA TTTTTCCCTT T |
| Length | 1571 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_1: 1088948.. 1090535 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G03790.1 |
| Description | Zinc finger C-x8-C-x5-C-x3-H type family protein |
| TAIR curator summary | Encodes SOMNUS (SOM), a nucleus-localized CCCH-type zinc finger protein. SOM negatively regulates light-dependent seed germination downstream of PIL5 (AT2G20180). |
| Alias | [AtTZF4][SOM][TZF4][SOMNUS][Tandem CCCH Zinc Finger protein 4] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1.41421 |
Ahg896878 | putative pentacyclic triterpene synthase 3 |
| 7.2111 |
Ahg487283 | Plant invertase/pectin methylesterase inhibitor superfamily |
| 8.94427 |
Ahg926546 | |
| 12.1244 |
Ahg313424 | Protein of unknown function (DUF707) |
| 12.4097 |
Ahg927040 | |
| 18.1384 |
Ahg348240 | Eukaryotic aspartyl protease family protein |
| 18.7083 |
Ahg346505 | cytochrome P450, family 709, subfamily B, polypeptide 1 |
| 21.3542 |
Ahg333002 | Late embryogenesis abundant protein (LEA) family protein |
| 22.0454 |
Ahg941608 | Glycosyl hydrolase superfamily protein |
| 23.3024 |
Ahg497075 | transposable element gene |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|