| Annotation |
|---|
| Description | jgi|Araly1|479358|fgenesh2_kg.3__2059__AT3G18524.1 |
| Sequence |
CGCCGCCGGT TGCCGCCAAT CCGTTTTCCC GCCAAATTCG ACACCATAAA TTTCTTCTAG TCGCTTTCTA TTCCAGTTCC ATTGGAATTC CACGAAAGAG TAACATTTAC ACCGGAGTCG CAGAACGTAG GCGAAGGATT TTTGCTTTCT CTATCTTCCA ATGGAGGGCA ATTTCGAGGA ACAGAACAAG CTTCCGGAGC TAAAATTGGA TGCAAAGCAG GCTCAAGGGT TTCTCTCGTT CTACAAAACC CTACCAAATG CTACGAGAGC TGTTAGATTC TTTGATCGCA AGGATTATTA TACAGCTCAT GGTGAAAATT CAGTTTTCAT CGCAAAGACT TATTATCATA CAACCACTGC TCTACGTCAG CTTGGGAGTG GATCAAATGC TCTTTCAAGT GTAAGCATTA GTAGGAACAT GTTTGAAACG ATTGCTAGGG ATCTTCTCCT GGAGCGTAAT GATCATACCG CAGAACTTTA TGAGGGAAGT GGATCGAATT GGAGACTTGT GAAAACAGGT TCTCCTGGAA ACATTGGAAG CTTTGAAGAT GTTTTGTTTG CAAACAATGA AATGCAGGAC ACACCAGTTG TTGTCTCCAT ATTTCCAAGT TTTCAGGATG GCAGATGCGT TATCGGTATG GCCTATGTTG ATCTGACTAG GCGAATTCTT GGACTAGCTG AGTTTCTTGA TGATAGCCGC TTCACCAATC TGGAGTCTTC GCTGATTGCT TTAGGCGCAA AAGAATGCAT TTTTCCAGCT GAATCGGGCA AATCCAATGA ATGCAAAAGC CTGTATGATT CTCTGGAGAG GTGTGCCGTG ATGATAACAG AGAGGAAGAA ACACGAGTTC AAAGGACGAG ATTTAGATTC AGATCTTAAG AGATTGGTGA AGGGGAATAT TGAACCTGTT AGAGATTTGG TATCCGGGTT TGACCTTGCG ACTCCTGCTC TAGGTGCATT ACTCTCCTTT TCTGAACTTC TCTCAAATGA GGATAACTAT GGGAACTTCA CGATCCGCAG ATATGATATT GGCGGATTCA TGAGACTCGA CTCTGCAGCT ATGAGGGCGT TGAATGTGAT GGAGAGCAAA ACTGATGCTA ATAAGAATTT CAGTTTGTTT GGTCTCATGA ACAGAACATG CACCGCAGGG ATGGGTAAGA GACTGCTTCA TATGTGGCTG AAGCAACCTC TCGTGGATTT GAATGAGATT AAGACGAGAT TAGATATAGT TCAGTGCTTT GTTGAAGAAG CTGGATTAAG GCAAGATCTT AGACAGCATC TGAAGCGAAT CTCAGATGTT GAGAGGCTTT TGCGCAGTCT CGAGAGAAGA AGAGGTGGGT TACAGCACAT TATTAAACTC TATCAGTCAA CTATAAGGCT TCCCTTCATC AAAACAGCTA TGCAACGGTA CACCGGAGAA TTCTCACCAC TCATCAGAGA GAGATACTTG AAAAAGCTTG AGGCGTTATC AGATCAAGAT CACCTCGGAA AGTTCATTGA TTTGGTTGAG TACTCTGTAG ATCTTGACCA GCTTGAAAAT GGAGAATACA TGATATCTTC AAGCTACGAC ACCACATTGG CATCTCTGAA AGATCAGAAA GAATTGCTGG AGCAGCAGAT TCACGAATTG CACAAAAAGA CGGCGATAGA ACTCGATCTT CAGGTCGACA AGGCTCTTAA ACTTGACAAA GCAGCACAAT TTGGGCATGT CTTCAGGATC ACGAAGAAGG AAGAGCCAAA GATCAGGAAG AAGCTGACGA CACAGTTTAT AGTGCTAGAG ACTCGCAAAG ACGGAGTGAA GTTCACAAAC ACAAAGCTTA AAAAACTGGG GGACCAGTAC CAAAGTGTTG TGGATGATTA TAAGAGCTGT CAGAAGGAGC TCGTTGATCG TGTAGTTCAG ACTGTTACCA GCTTCTCCGA GGTGTTTGAG GAGTTAGCTG GGTTGCTCTC TGAAATGGAT GTTTTGTTAA GCTTCGCTGA TTTGGCTGCC AGTTGCCCTA CTCCATACTG TAGGCCAGAA GTCACCTCTT CGGATGCTGG AGATATTGTA TTAGAAGGAA GCAGACATCC ATGCGTAGAA GCTCAAGATT GGGTGAATTT TATACCAAAT GATTGCAGAC TCATGAGAGG GAAGAGTTGG TTTCAAATAG TAACAGGGCC TAACATGGGA GGAAAGTCCA CTTTCATTCG CCAGGTTGGT GTGATTGTGC TGATGGCTCA AGTTGGTTCC TTTGTTCCTT GTGATAAAGC ATCAATTTCC ATCAGAGACT GCATCTTTGC CCGTGTAGGA GCAGGCGATT GCCAACTGCG TGGAGTGTCT ACTTTTATGC AAGAAATGCT TGAAACCGCA TCGATATTGA AAGGTGCTAC TGATAAGTCA CTGATAATTA TTGATGAACT TGGTCGTGGA ACATCAACTT ATGATGGTTT TGGTTTAGCT TGGGCTATAT GTGAGCATCT GGTTCAAGTG AAGAAAGCAC CAACTCTATT TGCTACTCAC TTCCATGAAC TTACTGCCTT GGCTCAAGCA AACTCTGAGG TCGCTGGTGA CACCGTTGGT GTGGCAAACT TCCATGTCAG CGCTCACATT GACACTGAAA GCCGCAAACT CACCATGCTT TACAAGGTTG AACCAGGGGC CTGTGACCAG AGCTTTGGGA TTCATGTGGC GGAATTTGCC AACTTCCCTG AAAGCGTAGT GGCCCTCGCA AGAGAGAAAG CAGCAGAACT GGAAGATTTC TCTCAGTCTT CCATGATAGT CAACAATGAG GAGAGTGGGA AGAGAAAGAG CAGAGAAGAT GATCCAGATG AAGTATCAAG AGGGGCAGCG CGAGCTCACA AGTTTCTGAA AGAGTTTGCA GCGATGCCAC TTGATAAAAT GGAGCTTAAA GATTCACTTC AACGGGTACG TGAGATGAAA GATGAGCTAG AGAAAGATGC TGCAGACTGC CACTGGCTCA GGCAGTTCCT GTGAAGAACC CTTGACGTTT TTTGGTTTTG GTTTTGTAAA TAGCCTAAAT CGGTTCTTGT AGTTGTGGTC GTTGCTTGGG ATGAAACTTA ATGAGGGCAA AAACGTTATT CTATAATTTT TGTAAGTAAA G |
| Length | 3101 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_3: 7488164.. 7492667 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G18524.1 |
| Description | MUTS homolog 2 |
| TAIR curator summary | Encodes a DNA mismatch repair homolog of human MutS gene, MSH6. MSH2 is involved in maintaining genome stability and repressing recombination of mismatched heteroduplexes.There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2 has different binding specificity to different mismatches in combination with MSH3, MSH6, or MSH7. |
| Alias | [ATMSH2][MSH2][MUTS homolog 2] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 8.12404 |
Ahg331651 | timeless family protein |
| 12.9615 |
Ahg493181 | Protein kinase superfamily protein |
| 13.3041 |
Ahg477176 | DROUGHT SENSITIVE 1 |
| 16.1245 |
Ahg493738 | ARM repeat superfamily protein |
| 24 |
Ahg902778 | DOMAIN OF UNKNOWN FUNCTION 724 6 |
| 26.1534 |
Ahg483610 | |
| 30.7896 |
Ahg940242 | SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein |
| 35.6651 |
Ahg477561 | |
| 37.7889 |
Ahg948807 | Helicase protein with RING/U-box domain |
| 44.4972 |
Ahg492959 | Transcription elongation factor (TFIIS) family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|