Detail



ID : Ahg482453

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|482453|fgenesh2_kg.4__1513__AT2G34900.1
Sequence
AGCTGGTATC TCTTCCGTCT TCTTCCTCCG ACCTGTGTCT TTCTTCTGAA TCTTCGAAAA GCTCTCGTGA GTCACTACTC TTCTCTAATG TCTGTACATG TCAAGGAAGA ACCTGTGCTT GTGCCAAACT GCGATGTCGA AAATACAGAG CTTGCAGTTT TTTATGGAAA TGGAGAAAGT GAGCTTGAGG ATTTCGGAAC CTGCGTAGAT GAGATAACTG ATAGAGTGAA TCAGCTTGAG CAAAAAGTTG TGGAGGTTGA GCACTTTTAC TCTTCAAAAG ATGGAGCAGC TCAAACTAAT ACTTCTAAGA GTAACTCGGG TGGAAAAAAG GTCGCTATTT CTCAACCAAA CAACTCGAAG TGTAACTCGG CCGGGAAAGA AAAATCAAAG GGAAAACATG TTTCCAGCCC TGACCTTATG CGTCAATTTG CAACAATGTT TCGTCAGATT GCTCAACATA AATGGGCATG GCCGTTCTTG GAGCCTGTTG ATGTTAAAGG ACTTGGACTT CATGATTATT ACAAGGTTAT AGAGAAGCCA ATGGACTTGG GAACAATTAA AAAAAAAATG GAGAGTTCGG AGTATAGCAA TGTCCGGGAG ATATATGCTG ATGTAAGACT AGTTTTCAAG AACGCGATGA GATACAATGA AGAAAAAGAA GATGTTTATG TGATGGCTGA ATCTCTTCTG GAGAAATTTG AGGAGAAATG GCTCCTGATA ATGCCTAAAC TTGTTGAAGA GGAAAAGAAA CAGGCAGACG AAGAAGCCGA GAAGCATGCA AATAAGCAGC TTACTCTGGA GGCTGCACAA GCGGAAATGG CTAGGGATTT AAGCAACGAA CTATATGAGA TCGATCTGCA GCTGGAGAGA CTCCGGGAAT CAGTAGTTCA GAGATGCAGA AAACTGTCTA CTCAAGAAAA GAAAGGACTT TCTGCAGCTC TAGGCCGTCT CTCACCTGAG GATCTGTCTA AGGCGTTAAA AATGGTTTCA GAGAGCAACC CGAGTTTCCC GGCTGGAGCA CCAGAAGTCG AGCTTGACAT CGATGTTCAG ACTGATGTTA CATTGTGGAG ACTGAAGGTG TTTGTGCAAG AAGCATTGAA AGCAGCTAAC AAAAGCTCTG GAGGAACAAA CGCTCAGAAC AATAACAATA CCGGAACTGG AGAGATCAAC AAGAACAATG CGAAAAGACG GAGAGAGATC TCTGATGCAA TCAATAAAGC TTCAATTAAA AGAGCTAAGA AGGCTTGAAT CTTTCTCTCT CTCTCTCTGT GTTTATTGAT CAACAAGGAA CAAGAGTTTG GTGAACACCA ATCTAAATTA GAAACTTTCC AGTTCCATTG CGCATGTTGC TTCAAATGTT GGCACTATGT AAAAAAGAAT GAATGTGAAA AAAATCTGAG CTAGAGAGGA GATATATAAA AAGACTGCTT GGAGCAGAAA TCTAATAAGA TCTTCAGTTT GAGAGATCTT TGGTTTGTTG AACGTTTCTT CGCTTTCATT ACCTTAAACC TCGC 
Length1514
Protein Sequence
Protein Residue
Map Locationscaffold_4: 15727801.. 15730441
Download Sequence
A.thaliana
AGI-codeAT2G34900.1
DescriptionTranscription factor GTE6
TAIR curator summaryEncodes a member of the BET subgroup of bromodomain proteins, a novel class of putative transcription factors. Its expression is induced during seed imbibition and downregulated during germination. Seeds of a loss-of-function mutant allele, imb1, show impaired cotyledon greening during germination in abscisic acid (ABA) and express higher levels of ABI5 protein than the wild type. Moreover, imb1 seeds are deficient in the phytochrome A (phyA)-mediated very-low-fluence response of germination.
Alias[GTE01][GTE1][IMB1][GLOBAL TRANSCRIPTION FACTOR GROUP E1][IMBIBITION-INDUCIBLE 1]
Gene coexpression
MR
MR Locus Description
16.9411 Ahg492297 FK506 BINDING PROTEIN 53
17.7764 Ahg488088 THUMP domain-containing protein
20.7846 Ahg483610
26.533 Ahg482616 growth-regulating factor 3
26.9815 Ahg317076
27.0555 Ahg313639 nuclear RNA polymerase A2
30.7896 Ahg486447 LETM1-like protein
35.4683 Ahg914030 methionine gamma-lyase
35.5106 Ahg896803
35.8329 Ahg485002 Ribosomal protein S5 domain 2-like superfamily protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression