Detail



ID : Ahg484068

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|484068|fgenesh2_kg.5__60__AT2G01500.1
Sequence
AGCCTTTTCA TCTCTCTTGC ATCACAAGTA AACCTCTCAT CATTCATTCC CACACAGCAC TGAAACTCAA GCATTTTCTC TCTCAAATCC CATTTCCCTA GCTAAAAGGT TCAAAATTCC ACAATAACAA CAACAACAAA AGACCTATTT TGTGAATCTT TTCTCTAAAT TAAAAGTGAT TAGGGCAAAC TTCTACATAG CATGGGCTAC ATCTCCAACA ACAACCTCAT CAACTATTTG CCCCTCTCTA CTACTCAACC TCCTCTTCTT CTCCCACACT ACTGTGATAT TAACGGCAAT GATCACCATC AGCTCATCAC TGCATCATCA GGAGAACTCG ATGATGATCG GAAAAATAAC ATTCCTGCGA CGGCGACTTC AAGATGGAAT CCGACACCCG AGCAGATCAC GATGCTAGAA GAGCTTTACA TGAGCGGAAC ACGGACACCG ACGACGGAAC ATATCCAACA GATAGCATCT AAGCTTCGTA AATATGGGAG AATCGAAGGG AAGAACGTTT TCTATTGGTT TCAGAATCAT AAGGCTAGGG AGAGACTAAA ACGACGCCGT TGTGAAGGAG GTGCTCTTAA CAAACCACAT AAAGATGTCA AGGATTCATC ATCAGGTGGT TATCGAGTTG ATCAGACAAA GAGCTGCCCA TCTCTTCCAC ACACAAACCC ACAGCCACAG CATGAATTAG ATCCTGCGAG TAACAATAAA GACAACAATG CTAAGAATGA AGATCATGGG ACAGCTGAAG AATCTGTGAG GGCATCAGAG GATGGTAAAG ACGCCACGTG GAGAAATCTT GTTACTTGGT CGATAACTCA AGAACCTGCA GGAGAGATTA ATATTGACCA AAATGTCAAC GGAGAAGGAC AAGAAGAAAC GAGGGAGATT CGAACTTTAG ATCTCTTTCC GGTTAGGGAG AACCACGAGG AAACAGGCCG GTTTACAGAG AAGACGAAAG CAAATCAAGT GTTTTGCAAC TACTGCTACT ACTACGAGTT CATGCCTCTG AAGAACTGAA ACAAAAACCC ATGTGTGAGT AATAAATAGG ACAAAGGGAT TTAATGAAGG TTTTACTTGT TCTTTTGTCC AGAAATGGTA AGTGATGTGT TCTTACTTCT TAGGTAGAAG AGATGAGTTT GAAGATGGAG ACGTGTAGTA AATGTTAGGA GCGTTTGAAT TTTTTATATA ATAGTTATTA CCCAAATGTG AAGGTGGACC ATGTTGGGGC TTGGGTTTGG AGCTGCAACC ATCTAATACA TGTGTCTGAA AGTTAAACTG AAAGCTTCGA TGGTTCCTTG TCAATGTAAG GAATATATAT TAA 
Length1333
Protein Sequence
Protein Residue
Map Locationscaffold_5: 247975.. 249958
Download Sequence
A.thaliana
AGI-codeAT2G01500.1
DescriptionHomeodomain-like superfamily protein
TAIR curator summaryPFS2 encodes a homeodomain gene that is a member of the WUS clade of transcription factors. It delays differentiation and maturation of primordia and regulates ovule patterning. The pfs2 mutant exhibits developmental defects in the maternal integuments and gametophyte, specifically, the boundary between the chalaza and the nucellus shifted towards the distal end of pfs2 ovule primordia. In addition, leaves displayed curling and petals were wavy and crenulated. Overexpression of PFS2 affects floral organ and leaf development. Single- and double-mutant analyses reveal that PFS2 activity represses AGAMOUS expression in young floral primordia. Also involved in regulation of response to low temperature.
Alias[HOS9][PFS2][WOX6][HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE 9][PRETTY FEW SEEDS 2][WUSCHEL RELATED HOMEOBOX 6]
Gene coexpression
MR
MR Locus Description
7.93725 Ahg335308
9.38083 Ahg328182 zinc finger (C2H2 type) family protein
14.0712 Ahg936407 Plant self-incompatibility protein S1 family
15 Ahg892520
21.2132 Ahg494335 Kinase-related protein of unknown function (DUF1296)
22.4499 Ahg893437
24.1247 Ahg480492 profilin 5
25.6905 Ahg333980
27.3861 Ahg343887 heavy metal atpase 1
40.025 Ahg352229 RNI-like superfamily protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression