Detail


ID : Ahg484555

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|484555|fgenesh2_kg.5__547__AT3G27670.1
Sequence
GGGTCGGTTC GGTTTCTCTA GCTTAACTTA TTGGGCCAAA TCGAGACGGC CCATTATCTA GCACCGGCTT ATCGGACTTC CTCTACCCGG CGCTGTAAAT TCCAAATCCC TCCGTTCACG TCTCCAAACT AGCCGTTGCC TTCTCTCTCC GGTCAAAGCG ATGGCCTCAT ACGCTACGTT ACTGGAGAAA ACTCGCGTTG CTCAACCTTC TATACAAAGA TTCGCAGTAA TTTCCGTCTT CTCCAAGTTA CGATCTGCTC CAGAACAATT AGGATCAGAA TCTGAAGCCG GAAGAGAAGC TATCTCCTTC TGTCTCACTT CTGAATCTGT CACTGTAGTT GATCAATCCG TTCGTGAGCT ATGTCGATTA GTATCAGACT CTGTCTTAGA CCTCTCTCGT GGTTTGTTAG AACTTCAATC AGCTCTCGAA GGATGCGATT CGAAATTGGT TTCGCTGTTT GTGAAAGGGT TAGGGTTTTT GATTCGTATT GGTTATGAAC GGAATTCTGG GAATTGGAAG TTTAATTCGA CGGAGAATCA TCCGTTTGTT AGGATTCTTT CTAGCCGAGC GGAGACACAG ACGGAGCTTC TTCATCAAGT ATCACTCTTT GTGATGCATA ATCGGCGATT AGGAATGGTG GGAGTATGTG AATTCTTGGA GCCGTTCTTG AATTTCACAA TACTGCGGAT TCCACTTGCA GATTCGTCGT CATCGTTGTT TGCGAGGGAG TTGATTTCAT CAATGGCTTC CCTTTGTTGC TCATCCCGCA AAGAAGCACT TCCGATATTC AGGTTGCTAT TGCGTTGCCT AAAATATATC CCGGGAAAAA ATCTGGAAGA CAATAGAAAT TTCAGCTACA TTGTCAAGAC TCTAGTGGAT GCCTACACTG TGGTTGTGAG AGACTTGGTT GGAACTGGAT TGGAAGTAAC AGAAGTTCAT CTGCTCGGCG TGCAACTGGT AGATGGTGTA CTTTTTCTTT GCGCTTCTCC TCATGTACAA ACAACCGAAC AAGAGTCTGT TATCGAATCT TCGAAGCATT TGTTGGCTGT TCAGAAAGAC CTTGGATTAC CATATTCACG TGATTTATCC TTGGTGGTTC TCTCGCTAGT TTTCATGCTT GCCAAATCCA GTGTCGAGCA TGAACAACTC TCTATTCTAA AGTTCCTGCT TTTTCTGCTC AAATGGAAAA CTGAAAGTGA AAACTTGTCG GTTAAAGATG CGGCCGGTTC AAGTGTGGAG TCTCTATTAT TGTTCCCTAT CATCGCACTG ATGTCTTCTC CTTCTAAATC AATCAAAGTA GCAGCAAGTA AGGTTCTTTC CATCATAGAA AATGTCTTGG TAACAGTGTC AAATGCACCA AAGATTGGGG TCCACACAAG TAAGGGAGAT TCACCACTCA GCAGGGTGGG CTCTGTCGTA TTTAGGGTCA TGCAGCAACT CTGGCATCAG AATGATTACG CACCTTCCAC GCCCTCCTTC CTCAGAGTGG CTTACATCAA TGGAAGTGAA AAACAGGAAA CTTATACAGG ACCAGTGACT TGGAATTCAC TACTTAGGGA ACATGCTGAA CGGTTTTGGG ATAGAAAAAA GTTGTCTGCG TCGTTTTGTC TTTCACAAGA GATACCTATT TTACTTGGTG CTGTTGCTGG TGTCATGGTG ATGCACCCGT CCCTAGGAGC TGATGCTGTT AGTTCTTTGA CTATTATTGG TGGCATCGAT CCTAAGATGT GTGTCCCGCT GTTGCTAGCT GTTCTATATT ACAGCAACTT GTTATCTCGA ACTAACGTCC CTTGTCAGGG TCTATTGTCA AAACTTCTGG GGTTGCTCCC ATCACTAGCT GCCCAACAGG TGATGATTCC ACTTGTAGTT CAGACTATTA CTCCAATGCT ACACAAGGAT GCGAAAGGTC TGTTGTATGC TACAGCAATT AGATTACTTT GCCAGACCTG GGTAGTCAAT GACCGTGCCT TTTCAAGTTT GCAAGAGGTG TTACGCCCAA AAGGATTTAT AGACTATATT TCAGAGAGAC ATATCTGCAT TAGTATGGCT GCTTCCATTC ACGATGTATG CAAGAGACAC CCTGATAGGG GGGTAGACCT AATCTTGTCC GTTCAGGCCT GTATAGAAAA CCAAGACTAT CCAGTTCGAG CACTTGGTTT TCAGAGTCTT TCCCATCTGT GTGAAGCCGA TGTCATTGAT TTCTATACTG CATGGGGTGT CGTTAAGAAA CATGCTCAAC ACATCAAACT GAATCCTCTC CTTGCTTATA GTGTATGCCT TCTTCTAAAG TGGGGTGCAA TGGATGCCGA AGCATATCCT GAAGATGCAG AAAACGTTCT GAACATTTTA TGGGAAATTG GGAGCTCTAT GCAGATGCCT CATGATTCCC AATGGACAAA GGCAAGAGTC TCTGCCATAG TGGCCCTGGG TCAATATGAG GTATCATTTA TGGAGAAAAA GTTTTCTGAT TTCAACAAGA ATTGTACATA TTTGCTCTTC TCGGAGACAA ATGCGGAAAT TTTGAATGCT TTAGAAGACC TTTCAATCAA GATCATGATT CACGAGCACA GCATCCGGCG TAGATATGTT AGAGAGAAGA AAGTTCCTGG TAGTAAGATT GAAAAGCTGC TTGATGTGAT ACCTCAGGTC ATCTTCCCTG CAGGGAAAGA AATAAAGACT GGAGAACTAC CTGGTGCGGC ATTACTATGT CTATCTTATA ACCCCAGAGA TGTGAAGTTT GGGTCATCAA GAAGCTTTCG TGATGTTCAT AGTCAATACG AGGAGGCATT TAGAGTAGTA GTCAAATCTC TCCAGCTGTC AAGAAATATT TCCCTTGCTC TTATTTCCTT GCAATCACTG AAAGCATTTA TGCGGCGTTG GATGAGAGCT AATATCTTGT CCATTGATGC AACGAGTAAA GAATTATCAT CGGATAAAAT TTCTAAAGCT GCAAACAACA TCATGAAGAG TCTGGTACAT ATGGCTGAAG AAGCTCTTCC CAGGTGTGCA GAAAACATAG CACTGGCACT GGGTGCACTA TGTGCAGCTT TGCCAGCTGC TGCTCATAAT ATTAAAGCGA CTGCATCAAA ATTTCTGTTG AGTTGGTTGT TGGAGCATGA GCATGAACAC CGTCAGTGGA CAGCTGGTAT TTCTCTTGGA TTGATTTCGT CGTCCCTACA TGTGACTGAC CACAAGCAGA AATTTCAGAA TATATCTGGG CTTCTTGAGG TTTTGTGTAG CAGTAAAAGC ACTCTTGTAA AAGGAGCCTG TGGGGTTGGA TTGGGTTTTT CATGCCAAGA TCTGCTCACT CGGACTGAAG CCTCTGCGAG CTCTGATATA GACAGTGACT CCTACAGGAA CCAAGAAGAA CGGCTCTTAG GAAGGATAGT GAGGTTACTA TCTTCAATAT TACATCGTTT CCTGCACACT CCGTGTGATA TCCTAGAAAG CTTGTCTGCA TTGTTCCCAG CTGGAAAGGA AGACAACGTT ATAGGTTTAC CTCAGCTGTT GGATGATAGT TCTGATGATT TTGATGATGA TACATGGGGT ATTGCTGGAC TCATTATAGG TTTGGGGATG TCAGTTGGTG CAATATACAG AGCTGGGAAG AAAGACGCTG TTGTAAAGAT TAAAAACCTG ATTGTATCGT GGATCCCATA TGCAGATTCT CTTAAGCAAA CTCCGGGTTC TAATAGTAAG GTATCAGTGA GACTGTTTTC AGTTGGTTCC TGCCTTGCAC TCCCAATTGT GATCACTTTC TGCCAAAAAG TTGAACTGTT TGATGCACAT GAGGTGGATC ATCTAATCGG TTGTTTCAAG GACCTTATTT CCGAGTTGCT GATTGTTAGA AAGTCTGGTG CTTTACGTAA GAGGTTGTTG ATGGCTTCCT GTATTGGGGC GGGAGACCTC CTTGGTTCTG TTCTGAATGA AGGTATCCAC CCTGTTAAGA TTGAGTCTGT AAAAGGGTTA CTAGAACTAT TCAGGACATG TTACTCTGGA CTTTACCCAC CGGTTGCTCA CTTTGGAGGC ATGCTCGGAG TTGTTAATGT TTTAGGAGCA GGTGCTGGGA ATTTGGTGTA TTTCCATCCT TTACCCCGTG CTCCTCCAGC CAGTTCTGAG GAAAACGAAA TATCTTATGT GTCAGGTCCT TTGCTTTCAA ACCCATATTT TACTCAGCAG TTGACGCCAG TTGTGCAAGA AATATTTCTT ATCGCACAAA ATACCAAGGA TCGCCAGCTC CAACATTATG CTGCATGGGC AATATCAATT CTTAGAAATT ACATGCGGTC CGGGGAAGCG TCAAGTCTCA GCAATGAAAA CCAATCTGAT GACTCTCACC GTAATTCCAT CTCTCACAAT GTTCCTGAAC ATACCATGGT CATGAAACTT GCTCAAGGCC TGACAAATCC AAGTTTTCCT TTGGCGGGTA GCCCTCTGAA TATTGGCACA ATGGAAAGTG CTTTGCGGTG TTTGTCTCAT GCTCCGAGAT TGCCAAACTT GGACTGGGGG GCAACAATAA GACGATTAAT GAAACAAGAG ACCCAGACCG ATGTATCGCA ATCAGGCGAT GTTCCCAAGG AAAGAACTCT TAGGGAAGAG TGCTTCAAAT TTTCATTAGC CTACGCAAGC GAATTTGATG AACTTCTAGC TTTTCTGGAC GAGTTGTCTG AACTAGCCAG ATTCAAGGCG CTAGAGCAGA GTCTCCAGTC ATGCCTGCTT TGTCATCTAG GGGATTTAAT GAGAATATTC TCAGGTTCAA GAATGAATAA ATTATTTGAC GATGTCTCTT GCTTTGTAAT CTCACTATCA TCAAACCAAG TATATAGCTG TGAACAGAAG AGCTCATTGA GGGTCTCTTT TTGGAAGGGT CTGAGTCAGT GTCTTGAAGA AACTTCGCTT GAATCTTCAG AATACATCAC AAAGATTGAA AAATGTATAG AGTTGCTTTT TGCTGTCTTA CCAGTAGCAT CACAATCTCC TGGAGCAGAT CAGATGGGTT CGGTGCACGA GTGGTCAGAG GCAGTTAGAT GTTTGCAGAA GTCGCCCCGG GATTGGTTAT ACAAATTTCT TCAGGTTTCA AATCTTGAAC CTCGAAACGG AGAGACGGAC TTCAAAGGTG ATCTAAAGAA GATCCAGGCA AAAGCCAAGC TAGCAAGACT TAGCTCAATT CCATTTTCCG AGTTAGGAAA ATTAAAGGCT ATTATATTAA ATTGTGAACA GTCAGATATC TGGAACGTGT TGATTGAGAT AGTAGCGGCT TTGCATCACG CCGAAGGAGG AATCAAAAGA CAGTGGCTCA TTGATGCAGT TGAAATCAGC TGCGTTTCTA GCCATCCTTC CACTGCTATT ATCTTCGTCG GCCTTCTTTC AAGTATCTGC TGCGAATACA TGCCGTTTCT CACTTTAGAC CGATCCACGG TGTTGAGCGA TATGTCTGTT ACCGTAACTT CTCTCCTGTC TGATCCCAGC TATGAAGTGG TCGCAGAGCC TGTCATCTCG TTTCTATGGA CTTCATTGGA ACGTATTTAC AGTTTTGCAA CTGAATCTGA CGCTAATGCA AGGATAAGCT CACAGCAAAT TGCGCAAAGT GAGAGAGATA AAGCATCAAT GCTTATGAAA GTGATGCATT ACATTTGTGT AGCCTTCAGA GATCATTTGC CTCTTGAGAA ACAGCTTAGA CTTGCTTCTA TGGAGATCCC TTGATTCCTT TTAAACTATT GTATAATTTT TATATTTAGG TGTATTTTGT TGTATTTTTA GTGGGATTTT CATTTCCCAC ATTGTTGTAT TTTTGAAAGA TATATA
Length5806
Protein Sequence
Protein Residue
Map Locationscaffold_5: 3732149.. 3741594
Download Sequence
A.thaliana
AGI-codeAT3G27670.1
DescriptionARM repeat superfamily protein
TAIR curator summaryA novel protein, did not show high similarity to any protein of known function; reveals a novel genetic connection between lipid synthesis and embryo development. Expressed in all tissues examined including leaves, flowers, roots, stems, and siliques, but accumulation levels were not correlated with the degree to which different organs appeared affected by the mutation. Mutant plants showed alterations in the cuticular wax profiles and embryo development.
Alias[RST1][RESURRECTION1]
Gene coexpression
MR
MR Locus Description
2 Ahg492730 sphingosine kinase 1
4.12311 Ahg311407 Beige/BEACH domain ;WD domain, G-beta repeat protein
4.24264 Ahg945284 GPCR-type G protein 1
4.58258 Ahg476410 Homeodomain-like/winged-helix DNA-binding family protein
5.47723 Ahg328503 ENTH/ANTH/VHS superfamily protein
8.66025 Ahg481550 ARM repeat superfamily protein
11.3137 Ahg495654 RNA-binding (RRM/RBD/RNP motifs) family protein
14.1421 Ahg950166 co-factor for nitrate, reductase and xanthine dehydrogenase 5
15.0997 Ahg485847 SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein
15.8745 Ahg491382 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression