| Annotation |
|---|
| Description | jgi|Araly1|489246|fgenesh2_kg.6__2380__AT5G23880.1 |
| Sequence |
GTTCATCGGA GAAATTTTAG GGTTTATATC GCCGAACGGA AAAAATGGGT ACTTCGGTGC AAGTTACTCC TCTCTGCGGA GTTTACAACG AGAATCCTCT TTCCTACTTA GTCTCCATTG ATGGTTTCAA CTTCCTCATC GACTGTGGTT GGAACGATCT CTTTGATACA TCCCTCCTCG AACCTCTCTC CAGGGTTGCT TCTAGTATAG ATGCAGTTTT GCTTTCTCAT CCAGATACGC TTCATCTTGG TGCTCTTCCT TATGCTATGA AGCAGCTTGG ACTCTCTGCT CCTGTTTATG CTACTGAGCC TGTTCATAGA TTAGGTCTTC TTACAATGTA TGATCAGTTT TTATCCAGAA AGCAAGTATC CGACTTTGAT TTGTTTACAC TGGATGACAT TGATTCTGCT TTCCAGAATG TGATCAGATT GACTTACTCT CAAAATTACC ATCTTTCTGG AAAGGGAGAG GGTATTGTAA TTGCTCCTCA TGTTGCTGGA CATATGCTGG GAGGTAGCAT CTGGAGGATA ACAAAGGATG GGGAGGATGT TATATATGCT GTTGACTACA ATCATCGGAA AGAAAGGCAT TTAAATGGAA CTGTTTTACA GTCTTTTGTT CGGCCTGCTG TTCTGATAAC CGATGCATAT CATGCTCTTT ATACCAATCA AACCGCAAGA CAGCAAAGGG ACAAAGAATT TCTAGATACC ATTTCAAAAC ATCTTGAAGT TGGGGGAAAT GTTCTATTAC CCGTGGATAC TGCGGGTCGA GTCCTGGAAC TTCTCTTGAT ACTTGAACAG CATTGGTCAC AAAGAGGTTT CAGCTTTCCC ATTTACTTTC TCACATACGT GTCATCTAGC ACAATTGACT ATGTTAAGAG TTTCCTCGAG TGGATGAGTG ACTCCATTTC AAAGTCCTTT GAGACTTCAC GTGATAATGC CTTTCTATTG AGGCATGTCA CTCTCTTGAT AAACAAGACT GATCTGGATA ATGCTCCACC TGGTCCAAAG GTTGTTCTTG CTTCCATGGC CAGTCTCGAA GCAGGTTTTG CTCGTGAGAT ATTCGTGGAG TGGGCAAATG ATCCCAGAAA TTTAGTCCTC TTTACTGAAA CAGGGCAGTT TGGCACTTTA GCTCGCATGC TTCAGTCAGC CCCACCTCCC AAATTTGTTA AAGTCACCAT GTCTAAGAGG GTCCCTTTGG CTGGGGAAGA GTTGATTGCA TATGAAGAAG AGCAAAACAG ACTGAAAAGG GAAGAAGCTT TGCGAGCTAG CCTCGTCAAA GAGGAGGAAA CAAAAGCTTC CCATGGATCC GATGATAATT CAAGTGAACC TATGGTCATA GATACGAAGA CTACTCACGA TGTTGTTGGT TCTCACGGGC CTGCATATAA AGATATATTG ATTGATGGAT TTGTTCCCCC ATCCAGCAGC GTAGCTCCAA TGTTCCCATT TTATGATAAC ACATCTGAAT GGGACGACTT TGGGGAGATT ATAAATCCAG ATGACTACGT GATCAAGGAT GAAGACATGG ACCGAGGAGC AATGCATAAC GGAGGTGATG TGGACGGGAG GCTTGATGAG GCAACTGCTA GTCTCATGCT TGATACAAGA CCTTCGAAAG TCATTTCCAA TGAGCTCATT GTGACTGTTA GTTGTTCACT TGTTAAAATG GACTATGAAG GTCGGTCAGA TGGCCGCTCA ATCAAGTCTA TGATTGCGCA TGTTTCTCCT CTTAAACTTG TTTTGGTACA CGCAATAGCT GAGGCTACAG AGCATTTGAA GCAACACTGC TTGAACAACA TCTGTCCACA CGTGTATGCT CCTCAAATAG AGGAAACTGT GGATGTGACT TCTGATTTAT GTGCTTACAA GGTCCAACTT TCTGAAAAGC TGATGAGCAA TGTGATCTTC AAGAAGCTGG GAGATTCAGA AGTAGCTTGG GTGGATTCTG AAGTAGGGAA GACAGAGAGC GACATGAGAT CTCTACTACC AATGCCAGGC GCAGCTTCTC CACACAAACC TGTTCTAGTA GGTGATCTGA AAATTGCAGA CTTCAAGCAG TTTCTGTCAA GCAAGGGTGT TCAGGTAGAA TTTGCAGGTG GAGGAGCTTT ACGTTGTGGA GAATATGTCA CTCTACGAAA GGTTGGCCCG ACTGGTCAAA AGGGGGGAGC ATCAGGTCCA CAGCAAATTC TGATAGAAGG ACCGTTGTGT GAAGACTATT ATAAAATCAG GGATTATCTC TATTCTCAGT TCTACCTCCT CTGAGCATAT GATATAGAAA AAAACGAAGC TTCTTCTCAT TTTTTCTCAA CACTTTTCAA CCACTCAACA TGTAATCTCG TATAGTTATT GCCTTGCTTT TAACCCCAAT CTTATAGATT AATGTGTTAA AAAAGGCAAT AGATGTTTGT AATCTTTTTT GTCTTTTGTC ATCTTAGTAG AAG |
| Length | 2443 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 9728949.. 9734231 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G23880.1 |
| Description | cleavage and polyadenylation specificity factor 100 |
| TAIR curator summary | Encodes a protein similar to the 100kD subunit of cleavage and polyadenylation specificity factor (CPSF), the factor responsible for the recognition of the AAUAAA motif during mRNA polyadenylation. The protein interacts with a portion of a nuclear poly(A) polymerase. It is likely to be a part of the mRNA 3'end formation apparatus. |
| Alias | [ATCPSF100][CPSF100][EMB1265][ESP5][CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100][cleavage and polyadenylation specificity factor 100][EMBRYO DEFECTIVE 1265][ENHANCED SILENCING PHENOTYPE 5] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 4.24264 |
Ahg471750 | alpha/beta-Hydrolases superfamily protein |
| 10.9545 |
Ahg355947 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| 11.6189 |
Ahg947562 | RING/U-box superfamily protein |
| 15.2971 |
Ahg920014 | Synaptobrevin family protein |
| 25.2587 |
Ahg908764 | carboxypeptidase D, putative |
| 26.6458 |
Ahg482876 | Amino acid dehydrogenase family protein |
| 27.6586 |
Ahg330506 | GTP binding;GTP binding |
| 28 |
Ahg474968 | E3 Ubiquitin ligase family protein |
| 30.3974 |
Ahg492344 | SUMO-activating enzyme 1A |
| 30.7571 |
Ahg472170 | DYNAMIN-like 1C |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|