Detail



ID : Ahg496037

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|496037|fgenesh2_kg.8__1853__AT5G59200.1
Sequence
TTTTCTCTTC CTCAACGAAC TGGGCTTTTT GTCGCAGGCC CATTAAACTT GGATTGGGCT AATTATAACC GTATGGCTAA AATTCTAACG GTTTAGAATC TTCATTTGAG CGCGAAATGA TTTCCTCCTT GGCGGCGATC ACCGGAGGGC CATCAACATT CCGGCGTGAT CCCGATGCAA ATACTCTCAG GCTAGCCCGC AGGAAAACAT TAATCTCTTT ATTACGAAAC TGCAAGAACA ATGCCCAAGT TCCATCGATT CACGCCAAGA TCATTAGGAC CTTCCATGAC CAAGATGCTT TCGTTGTTTT CGAGCTTATC CGTGTCTGCT CCACTCTTGA TTCCATCGAC TACGCTTACG ACGTGTTTCG TTATGTATCG AACCCTAATG TGTATCTGTA CACCGCCATG ATCGATGGTT TTGTGTCATC TGGTCGCTCC GCTGATGGAG TTTCGCTGTA TCATCGGATG ATTCACAGTT CGGTTTTGCC TGATAATTAC GTGATCACCT CCGTTTTGAA AGCTTGTGGT TTGGATGAAT GTAGAGAGAT TCATTCCCAG GTTTTGAAAC TTGGGTTCGG GTCTAGCAGA TCGGTGGGGC TAAAACTGAT GGAAATCTAC GGGAAATCTG GGGAATTGGC TGATGCTAAG AAGGTGTTCG ATGAAATGCC TGACAGAGAT CAGGTTGTAG CAACAGTCAT GATTAATTGT TATTCTGAAT GTGGTTGTAT TAAGGAGGCA TTAGAGCTGT TTCAAGATGT TAAGATCAAA GATACGGTTT GTTGGACTGC GATGATTGAT GGTTTGGTTA GAAACAGGGA GATGAACAAA GCATTGGAGC TTTTTAGGGA AATGCAGCTG TCTGTGTTTT ATCTGCCTGC TCGGATTTGG GTGCGTTGGA GCTCGGGCGC TGGGGTACAT TCGTTTGTTG AGAACCAAAA AATGGAGCTT AGTAATTTCG TAGGAAATGC TTTGATCAAT ATGTACTCCA GGTGTGGTGA TATCAATGTG GCAAAGCGGG TTTTCAAGGG AATGCGAGAC AAAGATGTCA TTTCATATAA CACGATGATT TCTGGATTAG CAATGCATGG AGCTAGCGTT GAAGCTATCA ATGTATTTCG GGATATGGTG AACAGAGGAT TTAGGCCGAA TCAGGTGACT TTAGTTGCTC TTTTAAACGC ATGTAGCCAT GGAGGTTTGC TGGATATAGG ACTTGAAGTT TTTAATTCTA TGTGGAGAGT TTTCAGTGTT GAACCACAGA TTGAGCATTA TGGATGTATT GTCGATCTTC TTGGTCGAGT GGGGAGACTA GAGGAGGCTT ACAGATTCAT AGAGAATCTG CCGATAGAAC CGGATCATAT CATGTTAGGA GCTCTTCTGA GTGCTTGTAA GATCCATGGA AACATGGAAC TCGGTGAAAA AATCGCCAAG AGACTATTCG AATCTGAGAA TTCAGATTCT GGGACATACG TTCTCCTATC GCATATATAC GCTTCATCAG GGAAATGGAA AGAATCTACA GAAATCAGAG AAAGTATGAG AGAATCAGGG ATTGAGAAGG AACCAGGATG CAGTACTATC GAAGTGGACA ACCAGATCCA TGAGTTTCAT GTGGGAGATA TAGCACACCC TCGTAAAGAA GCAATTTATC AGAGATTACA AGAACTGAAT CGAAATCTTA GATTCAAAGA GAATGAAACA GATATTATAA CGGGTTTGTA G 
Length1721
Protein Sequence
Protein Residue
Map Locationscaffold_8: 17791631.. 17793366
Download Sequence
A.thaliana
AGI-codeAT5G59200.1
DescriptionTetratricopeptide repeat (TPR)-like superfamily protein
TAIR curator summaryEncodes a chloroplast RNA editing factor.
Alias[OTP80][ORGANELLE TRANSCRIPT PROCESSING 80]
Gene coexpression
MR
MR Locus Description
35.805 Ahg930873 general control non-repressible 4
38.8458 Ahg932913
45.5851 Ahg492106 myb domain protein 97
83.1023 Ahg491864 Protein of unknown function (DUF626)
85.1822 Ahg321478 Fatty acid hydroxylase superfamily
88.7919 Ahg937168
89.0562 Ahg486469 Family of unknown function (DUF566)
90.1942 Ahg471835 organic cation/carnitine transporter 3
90.7083 Ahg494786 ATP binding microtubule motor family protein
95.7914 Ahg927870
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression