Detail



ID : Ahg497020

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|497020|fgenesh2_kg.8__2836__AT5G66020.1
Sequence
ATGGAGGGTA GGCACAAGTT ACACTCTGGC TTGCGTTTAT GGGAATTCCC TGATCAGTAC GTCATCGAGC CAACCGATGG TTCCTCCGCT TCATGTTTGG ACATTAGCCG TCTTGACGGC TCCATGAAGC TCATTGATCA AGTAGCAGAA TGCAACTCTT TGCGTGTCCC TAAAATCCGC TCCATTTTCG GTGTGGTCGG GATGCTGAAG CTCCTGGCAG GATCCTACTT AGTAGTTGTG ACAGAGAGCG AATCTGTTGG CTCGTTTTTG GGACATCCTA TATTCAAAAT TAATTCGCTC AAGTTTCTTC CTTGTGATCA TTCACTTGAA AACTCTCATG AAGAACAGAA AAAGATGGAG ACTGACTTCT CTAGGCTGCT AAGCGTCGCA GAGAGGACAA CTGGGCTCTA CTTCTCATAT GAAATAAACT TGACTCTCAC CGCACAGCGG TTGCATGATT TGGGTGATGA GTCTAAGTTG CTTCCTTTGT GGAGACAGGC TGAGCCTAGA TTTCTATGGA ACAACTATAT GTTAGAAGTT CTTATCGAAA ATAAGCTTGA TCAGTTCTTG CTTCCTACAA TTTTCCTTAA CCCTGCATCA CGTTTTCATA GTTTTCAAAC AGCCATTGGA AGAGATATCG TTGACATTAC TCTGATTGCT AGGAGATGCT CTAGAAGAAA TGGTACGCGC ATGTGGCGAC GAGGAGCTGA CCCTGATGGT TATGTTGCTA ATTTTGTGGA GACTGAGCAA ATTGTGCGCA TGAACGGATA CACATCATCA TTTGTTCAGG TTAGAGGATC CATGCCTTTT ATGTGGGAGC AAATTGTAGA TCTGACCTAC AAGCCCAAGT TTGAGATTGT CCAACCTGAA GAAGCTGTGA GGATAGCTGA GCGTCACTTT CTCGGCGTAA GGAAAAAATA TGGATCAGTT TTGGCGGTTG ATCTTGTCAA TAAGCATGGA GGTGAGGGGC GCCTAAGTGA AAGGTTTGCA GGTGCTATGC AGCACATCAC TGGTGATGAT GTAAGATACC TGCACTTTGA TTTCCATCAC ATATGTGGCC ATATTCACTT TGAGCGCTTA GCAATTTTGT ATGAGCAGAT GGAGGATTTC CTCGAGAAAA ACGGGTACTT TTTGTTTAAT GAAAAGGGTG AGAAAATGAA GGAGCAGCTT GGTATTGTGC GAACAAACTG CATAGATTGC TTAGACCGTA CTAATAGCAT GATAGGCCGA AACATGTTGG AATTTCAACT CAAAAGGATT GGTGTTTTTG GTGCCGAAGA GGCTATAAGC TCGCATAAAA ATTTTGATGA ATGCTATAAG ATATTGTGGG CTAATCACGG TGATGACATT AGCATTCAAT ACTCCGGCAC TCCTGCACTT AAAGGAGATT TTGTCAGGTA TGGTCAAAGG ACTGTCCAAG GAGTCCTTCA AGATGGCTGG AATGCCCTCG CACGCTACTA TCTGAACAAT TTTGCTGATG GAACTAAGCA GGATGCAATT GATCTTGTGC AAGGACACTA TATAGTTGCT GTGAGCCGAG ACATGGCTCC TGTGCCTCGA AAGGGAGGTC TTGAGGCTGT AGCTAACTTT CCGGTGGCTT TGATGGTGAT TCTGATCAGT TTCTGGTTTG CAACAATGTC TGTCAAACAA GTTGGGAGTA GTTATAAGCA CTTATTTTTC TCATTTGTTT GGGCGGGCAT CAGTGTAGCT GTCGCAGCAC TCGTGAGGGC CAATGGCCGG ATCTTCTGCA ACCGGCCTTG TCTGCACAAG CCCAGATCTT GA 
Length1782
Protein Sequence
Protein Residue
Map Locationscaffold_8: 21518093.. 21521668
Download Sequence
A.thaliana
AGI-codeAT5G66020.1
DescriptionPhosphoinositide phosphatase family protein
TAIR curator summaryMutants in this gene are unable to express female sterility in response to beta-aminobutyric acid, as wild type plants do. non-consensus AT donor splice site at exon 7, TA donor splice site at exon 10, AT acceptor splice at exon 13.
Alias[ATSAC1B][ATSAC6][IBS2][SACIB][SUPPRESSOR OF ACTIN 1B][SAC DOMAIN-CONTAINING PROTEIN 6][IMPAIRED IN BABA-INDUCED STERILITY 2]
Gene coexpression
MR
MR Locus Description
15.6525 Ahg474038 glycosyl hydrolase 9C1
20.1246 Ahg947206
27.7489 Ahg941402
47.3075 Ahg950073 C2H2 and C2HC zinc fingers superfamily protein
50.2295 Ahg904620
57.2276 Ahg472215 glyoxal oxidase-related protein
57.2364 Ahg352690
62.7375 Ahg887388 ECA1 gametogenesis related family protein
75.2596 Ahg911863
76.9935 Ahg900334
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression