Detail


ID : Ahg923882

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|923882|scaffold_105163.1
Sequence
CCCATTTCGC CGTGAAACCA ATGTCCGCCG TGAAATCTGT CTCTTCCTTC AGGCTCGCTT CTCTCCTCCG ACGTGAGAAT GATCCTTCCG CCGCAATTAA GCTTTTCCGA AACCCTGATC CAGAATCAAC GAACCCGAAA CGACCCTTTA GATACTCGCT TCTTTGCTAC GATATCATCA TCACGAAACT TGGTGGCTCC AAGATGTTTG ACGAGCTAGA TCAGGTACTT CTCCAGCTCA AGACCGATAC TCGGATCGTT CCTACAGAGA TTCTGTTCTG CAATGTAATC AATTTCTTCG GTCGTGGAAG ATTACCTAGT CGTGCACTCC ACATGTTCGA CGAAATGCCT CAATACCGTT GCCAACGCAC TGTGAAATCC CTGAACTCTC TCTTGAACAC ACTTCTTAAG TGCGGTGAGT TTGAGAAAAT GAAGGAACGT CTTTCGAGTA TTGATGAGTT TGGTAAGCCT GACGCTTGTA CTTACAATAT ACTGATCCAT GGATGTTCTC AGAGAGGGTG TTTCGATGAT GCTTTGAAGC TATTCGATGA AATGGTCAAG AAAAAAGTGA AGCCCACTGG AGTTACCTTT GGGACGTTGA TTCACGGGTT GTGCAAGAAT TTGAGGGTGA AAGAAGCATT GAAGATGAAG CAAGATATGT TGAAAGTGTA TGGAGTACGT CCCACGGTTC ACATTTATGC GTCATTGGTC AAAGCGCTTT GTCAAATTGG TGAATTGAGT TTTGCGTTTA AGCTAAAGGA TGAGGCGTAC GAAGGAAAGA TTAAAGTAGA CTCAGCTATA TACTCTACGT TGATTAGCTC GCTTATAAAA GCTGGAAGAT CAAACGAGGT ATCGAGGATC TTGGAAGAAA TGAGTGAAAA AGGATGCAAA CCCGACACAG TGACTTACAA TGTACTGATT AACGGGTTCT GTGTTGAGAA TGATTCGGAA TCAGCTTATC GAGTCTTGGA TGAAATGGTT GAAAAGGGCT TGAAACCAGA TGTTATAAGC TACAACATGA TACTTGGTGT CTTGTTTAGA ATCCAAAAAT GGGAAGAAGC AACTTACTTG TTTGAAGATA TGCCCAGAAG AGGTTGCAGC CCTGATACCT TATCTTATAG AATAGTTTTC GATGGACTTT GCGAAGGTTT ACAATTTGAA GAAGCTGCGG CTATCTTGGA CGAAATGCTT TTCAAAGGTT ATAAGCCTCG CAGGGACAGG CTAGAGAGAT TTCTGCAAAA GCTATGTGAA AGTGGAAAGT TGGAGATTCT AAGTAAAGTT ATCAGTAGTT TGCATAGAGG GAATGCTGAT GATGCAAAGG TATGGTCGGT TATGATACCT ACAACAATGT GCAAAGAACC CGTGATATCG GCGTCTCTTG ATTTGTTGTT GAACACAGAA AAGGAAGATG GTCCTTTATC AGCAATGCCG CCGTGCTAGG TCACCTGTCG TGCAAGTTA
Length1459
Protein Sequence
Protein Residue
Map Locationscaffold_1: 27092327.. 27093785
Download Sequence
A.thaliana
AGI-codeAT1G53330.1
DescriptionPentatricopeptide repeat (PPR) superfamily protein
TAIR curator summaryencodes a member of the pentatricopeptide repeat (PPR) gene family. T-DNA insertion mutants had a complex phenotypic expression, ranging from embryo lethal to seedling lethal, to just subtle changes.
Alias
Gene coexpression
MR
MR Locus Description
3.16228 Ahg936012 Pentatricopeptide repeat (PPR) superfamily protein
20.0499 Ahg480596 Pentatricopeptide repeat (PPR) superfamily protein
20.4939 Ahg328030 Tetratricopeptide repeat (TPR)-like superfamily protein
24.5561 Ahg934024 transducin family protein / WD-40 repeat family protein
26.533 Ahg946206
30.8058 Ahg900885 subtilisin-like serine protease 2
33.4664 Ahg329829 Tetratricopeptide repeat (TPR)-like superfamily protein
44.833 Ahg934382 Pentatricopeptide repeat (PPR) superfamily protein
48.4974 Ahg936381
50.951 Ahg950318
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression