Detail



ID : Ahg928372

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|928372|scaffold_300829.1
Sequence
GTGAAGCCCA CGATACAGGA ATGTCTAACA GAAGCCTCCA TTTGAAGAAA ATTTCATGGC TTTCTTCTCG GATTCTCTCA GACAATGTGC ACGGTCGATT TCGCCGACCA ATTACTACTC CAGCCACTTG TTTAGCTCCT TCACTCGATG GAGACATGAA CATTGGGTCC AAGACATTGG TCGAACACTG TTTCTCTCGC GGATTTGCAT CAGTACGACG AGTATCTCGA GCTTCTTCTT CTTCTTCTCC TTCCTCTCCA CATGTTGATT TACTCTCTTA TATTAAAGCT TCACTTGATA AACTTGAAGG TCCTTCCCAT CATTGGTTGA ATCGAGACAT TGGGAATAAA CAGCTTTTCA AGGACAAAGG AACTTATGTA GTTCTTGCTG GACATTTGCT AAACGAGACA AGTGATCTGA GTGGTTTCTT TGAGAAACTA AAGTTGCTTC AGCAGAGGTC TCCGGGTGTC TGTTTCATGT GCATTCACTT CAGTGATCAA GCTCGAATTG CTGATGATCG AACTGCTTTA GCTGAGTTGA TTGTGAAGGA ATACCTCACT TTTCCTGTAC TACTTTCTGA AAAAGGATTT CCCAAGACAA GTGGGGAAGT ACGTTACATC GTGTTTAAAG ATTTTAAGAA TCCTTTAATC TACGAAGAGA AGGATCTCGA TATTGCTTCT GTAGCTAAAG CTCTTGACAG CCTCAGTCAA GATACTGAGA AATCCAAGTC TGTCAGAATT TTCACGAACA CTTGGTCAAA ACAAGCTGAG GCTATCAAGG AATCACATTT CCCTTCTTTC TTTCAGGATT TGTTACTCTA CTTTCCAGGT TGTATCACTG CAGACGAAGT TGGAGAACGT CTGTTTCTTT CTGATACCAA CCATCATCGT ATAATTATGT TCGAAAAGAA TGGGAAGATT TTAGACAGTA TTGGTTGTTT CCCAGGTTTT GAGGATGGAG AATTTGAATC TGCAAAGATG TTACGTCCTA CAGGGGCCCT TTATGACGAA GAGGAGGATT GCCTCTACAT TGTAGATTCT GAGAATCACG CCATTAGAAG AGCAAATATA AATAGCCGGG TCCTGGAAAC AGTATATCCA AAGGTTATTA AGAAAAGTGG TGGCATATGG TCTTGGGTAA TGGAGAAAAT GGGTCTTGGA AAAGAGGATG ATATAACAGT TGATGCTGAT GCCAAATCAG AAGAATTTGA TGCTCGCTCT CTGTTGTTTC CATGGCATAT ACTGAAGCGT AATGATGAGA GTCTTTTGGT CCTTAACAAA AGCTTTTCGA AGTTATGGAT AATAAATTTA GCTACAGGAG AGATCGAAGA AGTCGTGGAA GGGTTTTCGA AGATAATGGA GATCTGCGGG CAATCAATCA CAGAGAAGCT ATCAGTGTTG AAACATATGC CTTCTAACTG GTTGCAACAG CAAACTGAGG CTATCATCTC ATGCAAGGAG CAGCCAAGTG CTTCCCTTTT ATCTTCTTTT ACTAAACTTG GAGAAGACAT TGTCATGACA GATATAGCTT GTCAGAGAGT TTTGAAGCTA AATATAGATT CTAGAGCATG CTCTAGCATT CAGTTCTCAA ACATTGGGAT CCTTGGGTTG CCCTATTGGT TGTTCATTCC ACTGGAGAGA GTTTTCAATC TAGCTAATGG TGTTCAGGAA GCACATCTCA GTCATACTCA GGAACTCCGG TTATTGCCAG GTAAAATTAG CTTACGGTTG AACATAGAGA TTCCTCCATG CACGGAGCTT GTTGAACCGA TACAAGAAAG CTGCATATGG CGACAGACAA GAGGCGCAAT CAGTGAAGTC TCGAGTGCTG GAAGTGCAGT TGAACCTTCC GAAAAGGTTG GAGTTTCACA ACAATGGTAT GATGAATTAG ACAGCCTCGC CAAAGAAATA GCCAACCCCG ACGCAGTTGA GGAAGAGGAG GAGGAAGATG TTAACCCCTC TGAGGTTGAA AGAGAAGAAG ATGGACGTAT TCACATTGAT TGTACTGTCA AAACCAGTCC TGGCTCAAGT GAGCTTATTG TCTATGCAGC TTTGTATTTA AGACTGTCGA GAAACAAAGA GACAGAAAGT GCGAGCCAGG AAGAACTGGC CAGAAAAATA GCAGAGATTT TAAAGCCAGT ACGAAACATT ACGACTATGA AGGAAGATTT GTTTGTGAAA CTGTTGTCCA AGTCAAAGAG AGAATTGAGA GACATTGTCT TCTTGAAGCC GATGCATGTG CGGATAAGGT TAGACTCGAT GGATCATCCA AAAGCCGATA ACTCAAGAGA CGTAATCTTG ACTGACTCCT CTGTTGAGGT TGATGTCTCT CTTTGACGAC GATTAGAGCG TGGGCC 
Length2356
Protein Sequence
Protein Residue
Map Locationscaffold_3: 2785581.. 2789792
Download Sequence
A.thaliana
AGI-codeAT3G07060.1
DescriptionNHL domain-containing protein
TAIR curator summary
Alias[emb1974][embryo defective 1974]
Gene coexpression
MR
MR Locus Description
4.79583 Ahg937581 Pentatricopeptide repeat (PPR) superfamily protein
5 Ahg359596
6 Ahg495232 cleavage and polyadenylation specificity factor 160
42.0951 Ahg491633 SHK1 binding protein 1
53.5724 Ahg493117 tRNA/rRNA methyltransferase (SpoU) family protein
55.3173 Ahg473719
62.7136 Ahg492300 Expressed protein
62.9285 Ahg485580 DNA binding
72.5603 Ahg903067 Tetratricopeptide repeat (TPR)-like superfamily protein
72.698 Ahg483634 Translation elongation factor EFG/EF2 protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression