| Annotation |
|---|
| Description | jgi|Araly1|936357|scaffold_500548.1 |
| Sequence |
GTTTTGCTTC TCAAATTCAT TACAATGTTG AAATTGAAAT CAGGATTTAA TCCAGTTTCT GAAATCTTTC AGTTTCTTTA TGAAGCTGGT TTAGGTTTAA AGCAATTCAC TTCTCGAAGT GGGATTACCA GGATTACTCA ACCACGCCGT GTTGCTGTCC TTGCCACTGC CAAGAGAGTG GCATTTGAGC TTGGACTTCG TCTCGGTAAA GAAGTCGGGT TTCAAGTTAG ATACGACAAA AAGATTGTTC TTCTGCTGCA GAAGGATTTC TTATTGAGGC GTTACTCTGT GATTATTCTC GATGAAGTCC ATGAAAGAAG CTTGAACACA GACATTCTCA TTGGGATGCT CACTCGAGTC ATTAAAATCC GACAGGAATA CTACGAGGAA CAACATAAGA GTCTTCAATC TGGAGGATTA GTAGACCAAT TTATCACACC ACTTAAACTT ATATTGATGA GTGCGACTTT GCGGGTGGAA GATTTTGTAT CGGGGAAAAG GTTATTCCCT AATATACCTC CTCTTATAGA GGTTCCCACT CGACAGTATC CAGTTACTAT ACATTTCTCC AAGAGGACTG AGGTTGTTGA TTATATTGGT CAAAGAGAAG TTGACTATTT ATGCGACAAG TTACGTAAGT CTTCAAAGGA ACTTGTAGGT CAAGCTGCTT TAAGAGATGC TTCCGTCAAG AAGAAATGCG ATGATGGTTC ATTTGTTGGT GTTGACATGA AGGAGATTGC TGAAGCATTT GATGATGACT ACAACAGTCA AAATTACAGG TTTAACTCGC ATGGAGATGA TCCTTTTGAA ATTGGTGATG GTAACTATGA TGATTTTGAA GAAGAAGACA TCTATGAGTC TGATGATGAC AGCGACTGGG AAATTGTTGA TGACGGCTTT GGAAGTTCAT TGGTAGAGGA AGGGAAGCAT GATGCTCTTC GAGAAACGTT TAATGCTTTG GAAGAAAATA ATGGACCCAA ATCTGCTGAG CCCAACAAGG AAAATTACGT GCTCCCACTT TATGCGATGC TATCTCCAGC TGCACAGCTC CGAGTGTTCG AGGATGTTGA GAAAGAAGAA AGACTTGTGG TCGTGGCAAC AAATGTAGCG GAAACTTCTC TGACTATTTC AGGTATAAAG TATGTGGTTG ATTCAGGTCG GGTTAGAGTG AAGAATTATG ATTCTAAGAC TGGTATGGAA AGTTATGAGG TAGAATGGAT TAGTCAAGCT TCGGCTAGTC AACGTGCTGG AAGAGCTGGA CGAACTGGAC CCGGTCACTG TTATCGTCTC TATTCATCTG CGATTTTTAG CAATATATTT GAGGAGTCTT CACCTCCTGA AATCACGAAA GTTCCTGTTG ATGGAATCGT TCTTCTCATG AAGTCTATGA ACATTTCAAA GGTTGAGAAT TTCCCATTTC CAACTCCGCC TGAGCCATCA GCTATTAGAG AAGCAGAAAG ATGCTTAAAA GCTTTAGAGG CTCTTGACAG CAACGGACGG TTAACACCAT TCGGAAAGGC CAGTGATTAC TCCCGGGCGA ATCTTGTCCT TGGATATGCG GTTGCAGCAG TAGCCGCGTT GAGCTTACCA AACCCTTTGA CAATGCAGTT CGAAGGAGAG AAGAAAACCG AGTTTGAAGA TGCTGGCAAA ATCGTCAAGC AAGAAGATAA ACAATGGAGA AAGGAGCGGA AAGAGAAGAT CAAAGCTGCT CAGGACAGAT TTTCCAACCA AAGCAGCGAT GGTTTGACTG TTGCTTACGC ATTGCATTCC TTTGAGGTCT GGGAGAATGG CGCGGGCTTC TGCTAGTCGA ACGGAATGCA TTTGAAGACC ATGGACGAAA TGTCTAAGCT CAAAGATCAG CTTTTGCGAA TTGTTTTCAG CTGTTGTAAG CCTTCTGAAA CCGAAGATGG TTTCTCATGG ACTCATGGGA CTATACAAGA CGTAGAGAAG TCATGGAGAA TCACCGGATC GTCTTCCTCA AGAAACCCGC TTTTACAGAA TGAAGAAGAG CTGTTAGGAG AAGCCATATG TACGGGATGG GCTGACCGAG TAGCTAGAAA GACTAAAGCG ACGGAATACC AAGCCTGCAC GTTTCAAGAA CCAGTTTTCT TCGAGCTCCT ACTCACCAAC AAACCGTACA TGCACAGAGC GACACGGGTG AAGCCGAAAT GGCTGGTGAA GCACTCAAAG TCTCTCTGCG TGTTCTCCAC ACCACTCAAG GACCCGAAAC CATATTACTC GAGTGAGGGG GATAGAGTTA TGTGCTGGGC CGTTCCGAGT TTTGGTCCTC GTAACTGGGG GCTTCCAGCT CACAGTGTGG CAATAACAGA GGATATACAC CGAGCAGCGG TTTCGGATGC GCTTTGCTTC AAGGAGAGAG AATGTTGGGG TTTAGAAAGA GTTGGGAGCT TGGTGAGAGT TTTGACAGAG AAGAAGATTG ATAGTTTGGA GACTTTGAGA AAGAGCTGGG AACAGAATCC GAATGTGCTT TATGCGGAGA TTGAAGCTTG GTTTCAAAGA AAGTTTCGTC ATTATGTTAA AGAGCTCCTA CTCACCAACA GACCGTACAT GCACGGAGCG ACACGGGTGA AGCCGGAATG GCTGGTGAAG CACTCAAAGT CTCTCTGCGT TTTCTCCGCA CCACTCAAGG ACCCAAAACC ATATTACTCG AGTGAGGGGG ATAGAGTTTT GTGCTGGATC GTTCCGAGTT TTGGTCCTTA TAATTGGGAG CTTCCGGCTC ACAGTGTGGC AATAACAGAG GATAGAGACC GAGCAGCGGT TTTCGGATGC GCTTTGCTTC AAGGAGAGGT ATTGCCTTGT TTAAAAAGCG TGAGGGTGTT AATGGCTGGG AAACCTGAAA TGTTGTTGGA AAGAGAAGCT TGGGGTTTAG AAAGAGTTGG GAGTTTGGTG AGAGTTTTGA CAGAGAAGAA GATTGATAGT TTGGAGACTT TGAGAAAGAG CTGGGAACAG AATCCGAATG TGCTTTATGC GGAGATTGAA GCTTGGTTTT AAAGAAAGTT TCGTCATTAT GT |
| Length | 3032 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_5: 2740593.. 2763669 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G33390.1 |
| Description | RNA helicase family protein |
| TAIR curator summary | Over-expression of this gene results in stem fasciation. The predicted amino acid sequence reveals the presence of two domains (DEXH-box or DEAD-box helicase and DUF1065 domain) and fragments of two more domains (HrpA domain and HA2 domain). |
| Alias | [ATFAS4][FAS4][FASCIATED STEM 4] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 30.0167 |
Ahg481833 | pumilio 3 |
| 31.9374 |
Ahg358310 | glycine-rich RNA-binding protein 3 |
| 39.6485 |
Ahg354097 | |
| 49.8999 |
Ahg495374 | RNA-binding KH domain-containing protein |
| 50.04 |
Ahg926692 | Putative integral membrane protein conserved region (DUF2404) |
| 50.6458 |
Ahg325857 | FtsJ-like methyltransferase family protein |
| 60.0417 |
Ahg476277 | Pentatricopeptide repeat (PPR-like) superfamily protein |
| 61.1801 |
Ahg889149 | |
| 61.7738 |
Ahg485028 | methyl-CPG-binding domain protein 5 |
| 70.993 |
Ahg327675 | pentatricopeptide (PPR) repeat-containing protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|