Detail



ID : Ahg938376

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|938376|scaffold_502567.1
Sequence
TCTCATGTCA GATACAGACT TAAATGGGTA AGAATAAGTC AGAGAAGGGG AAGCCAAGTG GAAACGATTC GAAAAAGGAG AAATTGTCAG TCTCAGCCAT GCTTGCAGGG ATGGGTCAGA AGAAGAGTAC ATCATCCAGA TCCAAAGATG CTCCAAAAGA TTCATCATAC ATTGATGACT CGTATCTTCC TCCTGTTGAA GGAGACGAAG ACGAAGGCGT TTCTGATGAG AAACAGGAAC AGACGGATGC AAGGAGGAAG CAAAAGAACA AAGAGCAACT CGATACCTCT GTGACTGATA GAGAACAAAA GAAGCGAGAG AAAAGAGAAA GATTAGCTTT CGAAGCTGCA CATATTGCAA AGACGAATGC CTTGAAGAAA GATCGTGATG CATTCACGGT TGTTATTGGA ACCAAGACTT CGGTGCTTGA AGGAGAAGAC ACCGCGGATG CTAATGTTAA AGATATATCC ATCGATTCTT TTTCTGTCTC TGTTAAGGGG AAAGAACTTC TCAAGAATGT ATCTGTCAAG CTATCACATG GTAAGCGATA TGGGTTGGTC GGGCAGAATG GAACCGGGAA GTCTACTCTG TTAAAGCTTC TAGCATGGAG GATGATTCCA GTTCCGAAGA ACATTGATAT TCTTCTTGTT GAGCAAGAGG CCGAGGCCAA TGAAAAGACT GCTGTGGAAG CAGTTGTTTC TTCCAATGAA GAGTTGGCTA AGGTACGGAA AGAAAAGGAA TCTCTGGAAG AAGCTGATGG AGAAAACGGT GATGATGGTA TTGGAGAAAG GCTTGCTGAA GTGTATGAGA GGCTAGAGAG GTTGGGGTCA CATACTGCTG AAGCACGGGC ATACCAAATT CTTGCGGGGT TAGGTTTCAC ACAAGATATG TTAGATAGTC CAACTGAAGA ACGCAGTGGT GGGTGGTTGA TGCGAATATC ATTAGCTAAA GCTCTCTTTA TGGAACCTAG CCTTTTGTTG TTAGATGAAC CCACCAACCA TCTCGACCAG AGTGCTGTTC AATTTTTAGA AGAGTATTTG TGTAGCTTGA AGAAGACGAC GTTGGTTGTT GTTTCACATA ACCCGGATTT CCTCAACATA GTTTGCACAG ATATAATACA TCTGCATGAG CAGAACCTCA ACTTGTGTCG TGGTAATTAC GATGATTTTA AACGTAGATA TGAGCAGCAA TGCAAAGAGA GGAATAAAAA GGTTGAGAAA CAGGAAAAAG CAGCTAAGAG AGCTCAGCAG AAGAAGGTAA TAAAGGGCAG AGCCAAAGCA ACAGAAGATG TACAAAAGTT GAGAGAATAT GAAGTGGTCT TTGATTTTCC AGAACCAACC GAGCTCAGTA CTGATTCTCT TTTGGAACTA ATTGATGTTT GCTTTTGTTA CCCCAACAGG ACAGATTTCA GGCTATTAAA TGTTGATGTA TGTATCGATA TGGAGACACG GGTTGCGATA GTTGGGCCAA ATGGAGCAGG AAAGTCCACT CTTATGAATC TTCTTGCAGG AGAACTAGAT CCAACGGAGG GTGAAGTGAT AAGAAGCCAG AAGCTGAGGA TTGGGAGGTA TTCTCAGCAC TTTGTTGACG GCTTAACAAT GGAGGAAACA CCCGTTGAGT ATCTTCTTCG CCTTTATTCT GACCAAGAGG AATTCAGCAA GCCAAGTGTG GTGCGTGCAA AACTGGCCAA GTTTGGGCTA AAAGGTCGCA ACTACGTAAC TCCAATTTCG AAACTGTCTG GGGGCCAAAA GGCTAGGGTT GTGTTCACCT CGATCTCAAT GTCGAAGCCA CACATTTTAC TTCTTGACGA GCCAACAAAT CACTTAGACA TTGAGAGTAT AGATGCGTTG GCGAGAGCAT TAGATGAGTT CACAGGAGGA GTTGTGTTGG TGAGTCACGA CTCGGGTTTC GTATCGCGTG TCTGTAAGGA TGAAGTTAAT AGGGAAATTT GGGTTGTAGA AGACGGAACA GTGAAAGCAT GCACATTGGA AGAGTACGAA GAAGACAAAG AAGAACTTGA TTAGTGAAGT TTTGTTGTTG GCTT 
Length2044
Protein Sequence
Protein Residue
Map Locationscaffold_5: 16115881.. 16117931
Download Sequence
A.thaliana
AGI-codeAT3G54540.1
Descriptiongeneral control non-repressible 4
TAIR curator summarymember of GCN subfamily
Alias[ABCF4][ATGCN4][GCN4][ATP-binding cassette F4][general control non-repressible 4]
Gene coexpression
MR
MR Locus Description
13.8924 Ahg919859 P-glycoprotein 10
23.622 Ahg487525 nodulin MtN21 /EamA-like transporter family protein
26.1534 Ahg892041 cation/H+ exchanger 26
29.5973 Ahg921700 ENTH/VHS/GAT family protein
33.2415 Ahg943128
41.2311 Ahg351608 Protein of Unknown Function (DUF239)
45.2327 Ahg355644 NAC domain containing protein 63
53.4416 Ahg917658 subtilase 4.13
54.2955 Ahg950935 Protein of unknown function (DUF1216)
56.745 Ahg481664 transposable element gene
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression