| Annotation |
|---|
| Description | jgi|Araly1|944232|scaffold_700461.1 |
| Sequence |
CTTTATTAAG CAAATTAGCA ATGGCTTCGA ATCTCGTGGA AATGTTTAAT GCTACTTTGA ATTGGGTTAC TATGATGCTG GAGAGTCCTT CAGCTAGAGT TGTCTTATTT GGTTTCCCAA TCCGAGGGCA CTTCTTTGTG GAAGGGTTGT TGGGTGTTGT CATTGTCATT CTCCTCACTA GGAAGAGTTA CAAACCTCCC AAGCGACCAT TGACCGAGCA GGAAATAGAT GAGTTATGTG ATGAATGGGT TCCTGAACCT CTTATACCTC CAATTACTGA AGACATGAAG CATGAGCCAC CAGTTCTTGA AAGTGCTGCC AGACCGCATA CAACAGTTAA TGGCAAAGAT GTGGTGAATT TTGCTTCAGC TAATTATCTT GGGCTCATTG GTCACGAGAA GTTGCTGGAA TCATGTACTT CTGCATTAGA AAAATATGGT GTCGGTTCTT GTGGTCCTCG TGGATTCTAT GGTACAATTG ATGTCCATCT TGACTGCGAA ACCAGAATAT CAAAATTTTT GGGTACTCCT GATTCAATCC TCTATTCTTA TGGACTTTCC ACGATGTTCA GCACAATTCC TTGTTTCTGT AAGAAAGGCG ATGTCATTGT TGCTGATGAG GGTGTTCACT GGGGAATACA AAATGGACTT CAGCTTTCAA GAAGTACAAT TGTGTACTTC AAGCACAATG ACATGGAATC CCTTCGAAGT ACCCTTGAGA AAATCATGAC AAAGTACAAG CGCTCAAAGA ACTTGAGGCG TTATATTGTA GCTGAAGCTG TATATCAGAA TTCTGGTCAA ATTGCGCCTC TGGATGAGAT TGTAAAACTA AAAGAGAAGT ATCGGTTTCG TGTTATATTG GATGAAAGCA ACTCTTTTGG TGTGCTTGGC CGTTCTGGGA GAGGTCTTGC AGAGCATCAT AGTGTCCCTA TTGAGAAGAT AGATGTTGTG ACTGCTGCAA TGGGCCATGC ATTAGCCACA GAAGGTGGAT TTTGCACTGG GAATGCCCGC ATCATCGATT ACCAGAGGCT TAGCAGTTCA GGATATGTGT TCTCTGCTTC TTTGCCACCA TACCTTGCAA GTGCTGCTAT CACCGCCATT GATGTCATTG ATCAAAACCC GGATATGTTA GTTAAGCTGA AGCAAAATAT TGCTCTGTTA TGGAAAGGAT TGTCAGATAT CAAGGGGATG TCGTTAACAA GCAACCGGGA ATCGCCTATT GTTTTCTTAA AATTAGAGAA ATCTAGCGGT TCAGCTAAAG ACGATTTGCT TCTACTTGAG GAAATGGCTG ACCGTGCTCT GAAGGAAGAC TCGTTGTTGG TTGTGAGTTC TAAAAGATCG TTTCTTGATA AATGCCGGTT ACCTGTGGGA ATCAAACTCT ACGTTTCAGC GGGACATTCG GAATCCGATC TTCTTAAAGC ATCCGAGTCG CTGAAGAGAC TTGCTTCAGA GCTTCTACTC AAGTCTTGAA ACACCAAACT CTTTTTCTTC A |
| Length | 1491 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_7: 1705553.. 1708154 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT4G36480.1 |
| Description | long-chain base1 |
| TAIR curator summary | Encodes the LCB1 subunit of serine palmitoyltransferase. Together with the LCB2 subunit, forms a functional serine palmitoyltransferase complex, which catalyzes the first reaction of sphingolipid biosynthesis. Knockout of LCB1 was embryo lethal. Partial suppression of LCB1 expression led to smaller plants due to reduced cell expansion. |
| Alias | [ATLCB1][EMB2779][FBR11][LCB1][long-chain base1][EMBRYO DEFECTIVE 2779][FUMONISIN B1 RESISTANT 11] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 15.4919 |
Ahg939541 | mRNA capping enzyme family protein |
| 20.0749 |
Ahg497270 | global transcription factor group E7 |
| 24.1661 |
Ahg476803 | RNA-binding (RRM/RBD/RNP motifs) family protein |
| 27.9285 |
Ahg478531 | Protein of unknown function, DUF593 |
| 32.3728 |
Ahg311964 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| 34.641 |
Ahg313173 | Pentatricopeptide repeat (PPR) superfamily protein |
| 35.242 |
Ahg476103 | Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain |
| 35.3553 |
Ahg473664 | |
| 36.4966 |
Ahg951624 | armadillo repeat only 2 |
| 44.4297 |
Ahg486380 | Protein kinase superfamily protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
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