Detail



ID : Ahg950262

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|950262|scaffold_802149.1
Sequence
TCTGTCCTCA TAGTGTCGAC ATGGCTTGCG AAAACAACCT CGTTGTGAAG CAAATCATCG ACTTATACAA TCAAATCTCA AACCTCGAGA GCTTAAAACC ATCCAAGAAT GTCGACACTT TGTTCGGACA ACTCGTATCC ACGTGCTTAC CTACAGACAC AAACATCGAT GTCACGGAGA TACACGATGA AAAAGTCAAA GACGCGAGAT CTCATCTCAT CAAGCTTTGT GGTGAAGCCG AAGGTTATTT AGAGCAACAC TTTTCAACAA TCTTAAGCTC TTTTGAAGAC AACCCACTAA ACCATTTACA CATTTTTCCC TATTACAACA ACTATATCAA GCTAGGAAAA CTCGAATTCG ATCTCCTAGC ACAACACACA ACCCATGTCC CGACCAAAGT CGCTTTTATC GGTTCGGGTC CGATGCCACT TACATCCATC GTCTTGGCCA AGTTCCATCT TCCCAACACA ACGTTCCACA ACTTCGACAT CGACTCACAC GCCAACACAC TCGCTTCAAA CCTCGTTTCT CACGATTCTG ACCTCTCGAA ACGCATGATT TTCCACACAA CTGATGTGTT AAACGCTAAG GAAGGGTTAG ACCAATACGA TGTTATTTTC TTGGCAGCTC TTGTTGGGAT GGATAAAGAG TCAAAGGTCA AAGCTATTGA GCATTTGGAG AAGCATATGG CTCCTGGAGC TGTGTTGATG CTAAGAAGTG CTCATGGTCT TAGAGCTTTC TTGTATCCAA TCGTTGACTC TTGTGATCTT AAAGGGTTTG AGGTGTTAAC CATTTATCAT CCGTCCGATG ATGTGGTTAA TTCGGTGGTC ATCGCACGTA AGCTTGGTGG GTCAAATGGA GCTCGAGGCA GCCAGATCGG ACGGTGTGTG GTTATGCCAT GTAACTGCTC TAAGGTCCAC GCGATCATGA ACAATCGTGG TATGGAGAAG AATTTGATCG AGGAGTTTAG TGCCATCGAG TAAACAAGTA ACTACATAAC ACATCT 
Length1006
Protein Sequence
Protein Residue
Map Locationscaffold_6: 1666890.. 1667894
Download Sequence
A.thaliana
AGI-codeAT5G56080.1
Descriptionnicotianamine synthase 2
TAIR curator summaryEncodes a protein with nicotianamine synthase activity. Its transcript levels rise in roots in response to zinc deficiency and rise in leaves in response to elevated levels of zinc.
Alias[ATNAS2][NAS2][ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 2][nicotianamine synthase 2]
Gene coexpression
MR
MR Locus Description
31.1127 Ahg925265
32.311 Ahg471893 Curculin-like (mannose-binding) lectin family protein
34.9857 Ahg320180 SKU5 similar 16
35.9583 Ahg949069 transposable element gene
37.8418 Ahg896903
65.2917 Ahg942969
65.8483 Ahg927569 Plant protein of unknown function (DUF946)
72.0555 Ahg936577
74.411 Ahg949855
76.7463 Ahg916260
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression