| Annotation |
|---|
| Description | jgi|Araly1|470417|fgenesh2_kg.1__371__AT1G04400.1 |
| Sequence |
AGAAAGTTCG TAGATGATCC CAATAAAATC GTAGATTAGC AAATCAAAGA TGAGATGTCG GTAAAAAAAA AAAAACACTA ATAAAAGAAC ATACGCCACT AGTTGTGGAT AAAGTTGTCT ACTTTTGTCT CGTTGTAATT ATTATATTGC ACAATTATTT ACATTCATAC TCTCATGGGT ATGTTTTTCG TCTCCGTTAG ATCTCAAATC TTTAACTTTG CATACCCAAA ATAGGAAGAA AGAAGAGTCA AGTCATTAAA ATATCCTTCA CAGTCTTTGA TTCTAAGATC TTTGTCGCCA AGAGATATCC TCTCTGATTT GAGTTCTGAA CTATCTTCTG GAGGAGCTTG AGGTCTGAAA TCATGGAAAA ACTTGGTTAG AGTGTGGAAT TTAGCTGATT TGGTCTTGAT TCATCTCTGA TCATAGCAAC TATGACGACG GACAAAAAGA CTATAGTTTG GTTTAGAAGA GACCTAAGGA TTGAGGATAA TCCTGCATTA GCAGCTGCTG CTCACGAAGG ATCTGTTTTT CCTGTCTTCA TTTGGTGTCC TGAAGAAGAA GGACAGTTTT ATCCAGGAAG AGCTTCAAGA TGGTGGATGA AACAATCACT TGCTCACTTA TCTCAATCCT TGAAGGCTCT TGGATCTGAC CTCACTTTAA TCAAAACCCA TAACACAGTT TCAGCTATCT TGGATTGTAT CCGCGTTACT GGTGCTACAA AAGTCGTCTT TAACCATCTC TATGATCCTG TTTCGTTAGT TCGGGACCAT ACCGTAAAGG AGAAGCTGGT GGAACGTGGG ATCTCTGTGC AAAGCTACAA TGGAGATCTA TTGTATGAAC CGTGGGAGAT ATACTGCGAA AAGGGCAAAC CTTTTACGAG TTTCAGTTCT TACTGGAAGA AATGCTTAGA TATGTCGATT GAATCTGTTA TGTTTCCTCC TCCTTGGCGG TTGATGCCAA TAACTGCAGC GGCTGAAGCG GTTTGGGCAT GTTCGATTGA AGAACTAGGG CTAGAAAATG AGGCCGAAAA ACCGAGCAAT GCGTTGTTAA CTAGAGCTTG GTCTCCAGGA TGGAGCAATG CTGATAAGAT ACTTAATGAG TTCATCGAGA AGCAGCTGAT AGATTACGCA AAGAACAGCA AAAAGGTTGT TGGGAATTCA ACCTCACTGC TATCTCCATA TCTCCATTTC GGGGAAATAA GCGTCAGACA CGTTTTCCAG TGTGCCCGGA TGAAACAAAT CATATGGGCT AGAGATAAGA ACAGTGAAGG AGAAGAAAGT GCAGATCTTT TTCTTAGAGG AATCGGTCTA AGAGAGTATT CTCGGTATAT ATGTTTCAAC TTCCCGTTTA CTCACGAGCA ATCGTTGTTG AGTCATCTTC GGTTTTTCCC TTGGGATGCT GATGTTGATA AGTTCAAGGC CTGGAGACAA GGCAGGACTG GTTATCCGTT GGTGGATGCC GGAATGAGAG AGCTTTGGGC TACTGGATGG ATGCATAACA GAATAAGAGT GATTGTTTCT AGCTTTGCTG TGAAGTTTCT TCTCCTTCCA TGGAAATGGG GAATGAAGTA TTTCTGGGAT ACACTTTTGG ATGCTGATTT GGAATGTGAC ATCCTTGGCT GGCAGTATAT CTCTGGGAGC ATACCCGATG GCCATGAGCT TGATCGCTTG GACAATCCCG CGTTACAAGG CGCTAAATAT GACCCAGAAG GTGAGTACAT AAGGCAATGG CTTCCCGAGC TTGCGAGATT GCCAACTGAA TGGATACATC ATCCATGGGA CGCTCCGTTA ACCGTACTCA AAGCTTCCGG GGTGGAACTC GGAACAAACT ATGCAAAACC CATTGTAGAC ATCGACACAG CTCGTGAGCT ACTCGCTAAA GCCATATCAA GAACCCGTGA AGCACAGATC ATGATCGGAG CAGCACCTGA TGAGATTGTA GCAGATAGCT TTGAGGCCTT AGAAGCTAAT ACAATTAAAG AACCTGGTCT TTGCCCATCT GTGTCTTCTA ATGACCAACA AGTACCTTCG GCTGTTCGTT ACAACGGGTC AAAGAGAGTG AAACCTGGGG AAGAAGAAGA GAGAGACATG AAGAAATCTA GAGGATTCGA TGAAAGGGAA TTGTTTTCGA CTGCTGAATC TTCTTCTTCT TCGAGTGTGT TCTTTGTTTC GCATTCTTGC TCGTTGGCAT CAGAAGGGAA GAATTTGGAA GGTATTCAAG ATTCATCTGA TCAGCTTACC ACAAGTATGG GAAAAAATGG TTGCAAATGA TCAAAATAAG CTTTATGTGC TGTTATAAAG CCTAACATGT AGATGTGTGA ATGTGTCTTG AAGTTTTAAC TCTCTTTTTC CTTTTGCTTA TACTCAAAAG GATATATGGT TGCATAAACA TATAATGCTG ATATTATTTC AATTGGCTAT GAATAAATTA TACAT |
| Length | 2435 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_1: 1350122.. 1353098 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G04400.2 |
| Description | cryptochrome 2 |
| TAIR curator summary | Blue light receptor mediating blue-light regulated cotyledon expansion and flowering time. Positive regulator of the flowering-time gene CONSTANS. This gene possesses a light-induced CNT2 N-terminal homodimerisation domain.Involved in blue-light induced stomatal opening. Involved in triggering chromatin decondensation. An 80-residue motif (NC80) is sufficient to confer CRY2's physiological function. It is proposed that the PHR domain and the C-terminal tail of the unphosphorylated CRY2 form a "closed" conformation to suppress the NC80 motif in the absence of light. In response to blue light, the C-terminal tail of CRY2 is phosphorylated and electrostatically repelled from the surface of the PHR domain to form an "open" conformation, resulting in derepression of the NC80 motif and signal transduction to trigger photomorphogenic responses. Cry2 phosphorylation and degradation both occur in the nucleus. |
| Alias | [AT-PHH1][ATCRY2][CRY2][FHA][PHH1][cryptochrome 2] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 7.2111 |
Ahg319530 | maternal effect embryo arrest 14 |
| 8.12404 |
Ahg487918 | Cystathionine beta-synthase (CBS) family protein |
| 8.66025 |
Ahg495637 | Calcium-dependent lipid-binding (CaLB domain) family protein |
| 9.8995 |
Ahg486329 | citrate synthase 2 |
| 12.1244 |
Ahg923937 | regulatory particle triple-A 1A |
| 12.8452 |
Ahg495534 | Uncharacterised conserved protein (UCP012943) |
| 17.3205 |
Ahg334507 | flavin-monooxygenase glucosinolate S-oxygenase 5 |
| 17.7764 |
Ahg473945 | calcium-dependent lipid-binding family protein |
| 17.8885 |
Ahg477103 | Ca(2)-dependent phospholipid-binding protein (Copine) family |
| 18 |
Ahg479762 | FRIGIDA-like protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|