| Annotation |
|---|
| Description | jgi|Araly1|470898|fgenesh2_kg.1__852__AT1G08370.1 |
| Sequence |
CAAGTAGACA ACAAAATAGC GAAGTGCGTT CAAAAAGTTA GCGTTTTCGT CTCCGTCCCC AAATCTCACA GCTTCCGTAA ATCAGAATTC TAGGGTTCTT CCGATTAGGC TAAAATCGAA TCGAGATTCC CTAAAAATCT GAGCTTTGAT TTATAAAAGA TGTCTCAGAA CGGGAAGATA ATCCCAAATC TGGACCAGAA CAGTACGAGG CTCCTCAATC TCACAGTTCT CCAGCGGATC GATCCATACA TCGAGGAAAT CCTCATCACA GCCGCTCATG TCACTTTCTA TGAATTCAAC ATTGAGCTCA GCCAATGGAG TCGTAAGGAT GTTGAAGGAT CTTTGTTCGT TGTCAAAAGA AGTACACAAC CTCGATTTCA GTTTATTGTG ATGAATCGTC GTAATACAGA TAATCTGGTG GAGAATCTCC TGGGAGATTT TGAGTATGAA GTCCAAGGTC CTTATTTACT TTACCGTAAT GCATCTCAAG AAGTAAATGG CATTTGGTTC TACAATAAAC GTGAATGCGA GGAGGTAGCA ACTCTTTTCA ACAGGATACT TAGTGCATAT TCCAAGGTTA ACCAGAAGCC AAAGGCCTCA TCTTCAAAAA GTGAGTTTGA GGAATTGGAA GCTAAGCCTA CAATGGCAGT TATGGATGGT CCTCTTGAAC CATCATCAAC TGCTAGGGAT GCCCCTGATG ATCCTGCTTT CGTCAACTTC TTTAGCTCAA CGATGACTCT TGGGAACACT GCGAGTGGGT CAGCAAGTGG ACCACCTTAC CAATCATCAG CGATTCCTCA CCAACCTCAC CAACCTCACC AATCCACCAT TGCTCCTCCT GTAGCGGCAA CAGCACCTCC ACAGATACAA TCACCACCGC CTCTACCATC CTCCTCTCCT CTGATGACTC TCTTTGACAA CAACCCTGAT CTTATCAGCA GCAACTCCAA TGTTCACGCC GATTTGGTGA AGCCGTCTTT CTTTGGGCCC CCGCGAATGA TGGCACAACC ACACCTCATT CCTGGTGTAT CTATGCCCAC TGCTCCTCCT CTCAATCCTA ATAATGCGAG TCACCAGCAG CGGCCATATG GTACTCCGGT GCTCCAGCCT TTCCCACCCC CAACTCCACC ACCATCACTC GCTCCTGCAC CCACTGGTCC GGTTATCAGC AGAGACAAAG TGAAAGAAGC CCTTTTATCC CTGTTTCAGC ACGATGAATT CATCGACATG ATGACCCGAG CTTTACAAAA TGCACATCAA CCATGAAGCT GCACTGGGTC AGCATCTACG TGTGGGACAG TGGCTGTTTG ATTTAGAATG TGTAGTTAAA ATGTAGTTTT GTTTCCTCTG AAAGTGTTGT TGGAACCTTA TAAGATACTG CACTGCTCCC TTTGTTTAAC TCATGGAATT ACTTTTTCAT TTTATCTACT TTCAAGTTTT TACCTTTCCT C |
| Length | 1451 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_1: 2982014.. 2984364 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G08370.1 |
| Description | decapping 1 |
| TAIR curator summary | Encodes DCP1 involved in mRNA decapping. DCP1 forms a mRNA decapping complex with DCP2 (At5g13570) and VCS (VARICOSE) (At3g13300). However, unlike DCP2, DCP1 itself does not have mRNA decapping activity in vitro. DCP1, DCP2 and VCS colocalize in cytoplasmic loci, which are putative Arabidopsis mRNA processing bodies. Null mutants of DCP1, DCP2, and VCS accumulate capped mRNAs with a reduced degradation rate. These mutants also share a similar lethal phenotype at the seedling cotyledon stage, with disorganized veins, swollen root hairs, and altered epidermal cell morphology. The protein was shown by immunoprecipitation not to interact with DCP2. |
| Alias | [ATDCP1][DCP1][decapping 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 7.74597 |
Ahg492634 | Alkaline phytoceramidase (aPHC) |
| 8.06226 |
Ahg347136 | SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein |
| 8.94427 |
Ahg479149 | TOPLESS-related 2 |
| 9.16515 |
Ahg478777 | galacturonosyltransferase 4 |
| 9.32738 |
Ahg477983 | binding |
| 12.1655 |
Ahg496189 | DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain |
| 19.975 |
Ahg485174 | B12D protein |
| 20.3961 |
Ahg479304 | Transducin/WD40 repeat-like superfamily protein |
| 24.4949 |
Ahg936878 | Transducin family protein / WD-40 repeat family protein |
| 24.8193 |
Ahg480677 | VPS35 homolog A |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
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