| Annotation |
|---|
| Description | jgi|Araly1|471276|fgenesh2_kg.1__1230__AT1G11400.2 |
| Sequence |
TTAAACCACA TTAACCTGTC TCGATCCATC ACGGTCGACA TAAGGTTTCG TTTCACCGGA TTTGGGCTCT CCGGCGACGG AGAATAGCCA AATTTGATAC AGAAAACAGT AGACATAGCT GAGAAACAAG AGAAGTGACA AGGGTGATTG AAAACTTGAA GGACTCTGAT GGGAAGCAGC AACAAAAGTG GAGAACAAGG AAAGCAAATG GCAGAACTGA GCAAAAGTCT TAAAGAAGGT GAGAGGATTC TGGAGCCCAC ACGTAGACCT GATGGTACCC TCCGGAAACC CATCCGGATT CGAGCTGGAT ATGTTCCACA AGATGAAGTT GTCAAATATC AGTCCAAAGG TTCTCTGATG AAGAAGGAGA TGGCCTCACA AGGGCCTCCT GGTTATGAAC CTGATCCAGC TCCGAAACCA AAGACTAAAT CTGCTAAGAG GAACGAACGT AAAAAAGAGA AGAGATTACA GTCTACTGCA GAAAAAGGTA ACAGCTCTGA GGATGGATCA GCTAGTAATG GATCCCAATC GGTGAATGTA TTGGCTTCTG AAATGGAGGC TTTGGACGTT TCTTCAAATA ATGATGTATG TGGAGAAGCG CCCAATCCAG TAACTACAGG AGAAGACGTA GAGAAAAGAA TCCGCGCACT TAAGAAGAAA ATCCGACTTA CAGAAGCTCA ACAGCAGAAG ACTGCTTCCC AAGACTTAAA CCCGGAGCAG TTAGAGAAAT TTTCTAAGTT GGAAGAATGG AGACAAGAAC TCAAGGCTCT AGAGGATAAG GAGGCTTGAC TTGCTGCAGC ATCGACATGA ATGGTCTAAC TTTTAGACAG GCTGTAGTAT CTCTCATGAA ATTTCTGGAA CCAATCCAAA TTTGTATCAA TGAAAAGAAA GCTGTTGTTA CTTCTTAGGT TTTGTCAGAT CTGATTAATG AACTTGGCGC AATGCCTGAA TCCTCATGGG AATTGATGTC ACATTGTGTT TGCGTTTGGT CCTAATCTAA AGAACGTGAT TCCAAAC |
| Length | 1017 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_1: 4371088.. 4373180 |
| Download Sequence |
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| A.thaliana |
|---|
| AGI-code | AT1G11400.1 |
| Description | partner of Y14-MAGO |
| TAIR curator summary | The PYM gene encodes a protein capable of interacting with MAGO, and Y14, whose orthologs form part of the exon junction complex in animal cells. In vitro binding assays indicate that PYM can bind to MAGO and Y14 either individually, or when they are together. But, MAGO-Y14-PYM ternary complexes are difficult to detect in vivo in Arabidopsis based on pull-down experiments. However there is some evidence for a weak association in Arabidopsis flowers. PYM appears primarily cytoplasmic, but it also seems to into the nucleus at times. Its nuclear localization signal has not been rigorously defined, but there is evidence for a nuclear export signal between amino acids 171-205 in the C-terminus. |
| Alias | [PYM][partner of Y14-MAGO] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 6.32456 |
Ahg336533 | NF-X-like 1 |
| 7.54983 |
Ahg478314 | RAB GTPase homolog E1E |
| 8.7178 |
Ahg951429 | nitrogen fixation S (NIFS)-like 1 |
| 14.4222 |
Ahg495780 | CwfJ-like family protein / zinc finger (CCCH-type) family protein |
| 20 |
Ahg940804 | Auxin-responsive GH3 family protein |
| 20.4939 |
Ahg486396 | ENTH/VHS family protein |
| 21.5407 |
Ahg941202 | exportin 1A |
| 21.9773 |
Ahg478277 | Lung seven transmembrane receptor family protein |
| 22.8473 |
Ahg470624 | SKP1/ASK-interacting protein 16 |
| 36.9324 |
Ahg487751 | CD2-binding protein-related |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
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| The four seasons |
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| Growth Chamber expression |
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