Detail


ID : Ahg473144

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|473144|fgenesh2_kg.1__3098__AT1G29340.1
Sequence
GAGAAAACCC CTTCCATGGC CTCAGCGGCG ATATTCTCAT CGTTACGACG GAGGAGATCG CCGTCTCTGG AAGCATTTCT AGCCCCCGTT GACCTTTCCG GCGTCGCACT TGTTCAAACC CTAGCTTCAA TCTCAACGGA GGTTGTTTCT TGTTTCACCT CTGTACGATT CTCGTTTCAA CGCAAGAACG CTCGTTCTTT GATTCGTAAG ATCGAGATCT TTGTCGTATT GTTCGAATTT CTCGTAGATT CAAATTGGGG CTCATCAAGA AGTAGAAGAA GAAGCTCTGT TTCTGAATCA ACAGCTTTGC TTTGTCTCAA GGAGCTTTAT CTTCTTCTCT ATCGCTCCAA GATCCTTGTT GATTACTGCG CTCAATCTAG TAAGTTATGG CTCTTGTTAC AAAACCCTTC GATTTCTGGG TATTTCCATG ATTTGAATCA AGAAATTTCG ACTCTTTTGG ATGTTTTACC TGTCAACGAT CTTGGTTTAA GCGATGACAT TAGAGAGCAA ATCGAGTTAT TGCAGAGACA ATCAAGAAAA TCAAGATTGT ATATTGATAA GAACGATGAG TCGTTACGTG AATCATTCTA TTCGTTTCTT GATGGGTTTG AGAACGGTGA GATTCCGAAT TCGGTTGATC TGAGATTGTT CTTTGTTGAG AGATTGGGGA TAAGGGATTC GAAGAGTTGT CGAACCGAAA TCGAGTTTTT GGAAGAACAG ATTGTGAATC ATGATGGTGA TTTGGAGCCT ACGGGATCGG TTATTAATGG TTTTGTGGCG ATTACAAGGT ATTGTAGGTT TTTGTTGTTT GGATTTGAAG AAGATGGATT GGAGTGGAGG ATTGAGAATC CGAAGAAACC TCGAAAAGGG TTCGTTGCAC AGGAGATTGG GGATACGTTT ATAACTGTTC CAAAGGATTT TGTTTGTCCA ATCTCTCTTG ATTTGATGAC AGATCCTGTG ATTATTTCCA CTGGGCAAAC TTATGATCGG AGCTCTATAG CTAGGTGGAT TGAAGAAGGG CATTGTACTT GTCCGAAAAC CGGGCAAATG CTTATGGATT CGAGGATTGT TCCTAATCGA GCTTTGAAGA ATTTGATTGT GCAATGGTGT ACTGCTAGTG GTATATCTTA TGAGTCGGAG TTTACGGATT CTTCGAATGA GTCTTTTGCT TCGGCTCTTC CGACGAAAGC TGCCGTTGAA GCGAACAAAG CGACGGTATC GATCCTTATT AAGTATCTAG CAGATGGTTC TGAAGCTGCT CAGACTGTTG CTGCACGGGA GATTCGTCTT TTAGCGAAAA CCGGGAAAGA AAACAGAGCA TACATTGCTG AAGCAGGCGC GATACCGCAC TTGTGCCGCC TTCTCAAATC CGAAAACGCT ATTGCGCAAG AGAATTCAGT GACCGCGATG TTGAATCTTT CGATATATGA GAAGAACAAG AGTCGGATTA TGGAAGAAGG TGATTGTTTG GAGTCTATAG TAAGTGTTCT TGTTTCTGGT CTCACAGTGG AAGCGCAAGA AAACGCAGCA GCTACATTGT TTAGTCTCTC TGCTGTACAC GTGTACAAGA AACGGATAGC AGTTGTTGAT CAGTGCGTTG AGGCATTAGC GTTGCTGCTT CAAAACGGGA CACCGAGAGG GAAGAAAGAT GCGGTTACAG CGTTATATAA CTTATCGACA CATCCAGATA ACTGCAGTAG GATGATTGAA GGAGGAGGAG TGTCAAGTCT TGTTGGCGCT CTCAAGAACG AAGGTGTAGC AGAGGAAGCT GCAGGAGCTT TGGCTTTGTT AGTTAGACAA TCACTTGGTG CTGAGGCTAT AGGGAAAGAG GACTCTGCTG TGGCAGGACT CATGGGAATG ATGAGATGCG GAACGCCAAG AGGGAAAGAG AACGCGGTCG CTGCATTGCT CGAACTCTGT AGGAGCGGTG GAGCCGCTGT GGCAGAGAAA GTGTTGAGAG CACCTGCGAT TACGGGATTG CTTCAAACGC TTTTGTTTAC GGGGACAAAG CGGGCTAGAC GGAAAGCGGC TTCGCTTGCT CGGGTTTTCC AGAGGCGGGA GAATGCAGCG ATGCGGTCTG GCGTTTACGG GTTTGTAGGG AATTCAAACG GCAATAGAGA CGGCAGTTTT ACAACGGATG TCTCAGTTCC GATATCAATC TCAATCTCCG TACCTGTGTT GTGATCTATG TTTAGTCTTA AAAAACTCTA AAAGAGGTAC TTTTTTGTTG TTGGTGGTGT TTGTTTCATT GTTTTGTCTA TATTATATAC ATTTATTGGT TGGGAGGTAT AATACAAGTA ATATTTTAGA GAGGATATGT GTATATGTTA ATACTATGTA TCTTCCAGGG GAAAAAGAGA GCAAAAATGA GTTTAGTGTA TGATGATCTT TATGTGTATT GTATTTGATG TATAAGC
Length2417
Protein Sequence
Protein Residue
Map Locationscaffold_1: 12284667.. 12287077
Download Sequence
A.thaliana
AGI-codeAT1G29340.1
Descriptionplant U-box 17
TAIR curator summaryEncodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity. It is required for cell death and full resistance specified by Arabidopsis RPM1 and RPS4 resistance proteins against Pseudomonas syringae pv tomato.
Alias[ATPUB17][PUB17][ARABIDOPSIS THALIANA PLANT U-BOX 17][plant U-box 17]
Gene coexpression
MR
MR Locus Description
1.73205 Ahg489045 Tetratricopeptide repeat (TPR)-like superfamily protein
3.16228 Ahg470601 RING/U-box superfamily protein
15.1987 Ahg489979 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
15.8745 Ahg943421
18.2483 Ahg485366 VIER F-box proteine 2
20 Ahg928240 Serinc-domain containing serine and sphingolipid biosynthesis protein
20.3224 Ahg920146 auxin signaling F-box 3
25.5343 Ahg495985 zinc finger (CCCH-type) family protein
26.4575 Ahg474385 Putative thiol-disulphide oxidoreductase DCC
29.5635 Ahg487009 proteolysis 6
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression