| Annotation |
|---|
| Description | jgi|Araly1|480851|fgenesh2_kg.3__3552__AT2G18790.1 |
| Sequence |
TTATTGGTTT CTCCACTTAT CTCCGATCCC AATTTTCTTC TTCCTAAACC CAAATTCAAA TCTCTTGAGA ATTTAGCTCT ACCGGAATTC GTCTCCGATA ACTACATGGT TTCCGGTGTC GGCGGTGGTG GCCGTGGCGG AGAAGCAGAA CCGTCGTCAA GTCACACTAC TAATAACCGA AGAGGAGGAG AACAAGCTCA ATCTTCAGGA ACAAAATCTC TCAGACCACG AGAATCAATG AGCAAAGCAA TTCAACAGTA CACCGTCGAC GCAAGACTCC ACGCCGTTTT CGAACAATCC GGCGAATCAG GGAAATCATT CGACTACTCA CAATCACTCA AAACGACGAC GTACGGTTCC TCTGTACCTG AGCAACAGAT CACTGCTTAT CTCTCTCGAA TCCAGCGAGG TGGTTACATT CAGCCTTTCG GATGTATGAT CGCCGTCGAT GAATCAAGTT TTCGAATCAT CGGTTACAGC GAAAACGCCA GAGAAATGTT AGGGCTTATG CCTCAATCTG TTCCTACTCT TGAGAAACCT GAGATTCTAG CTATGGGAAC TGATGTGAGA TCTTTGTTCA CTTCTTCGAG CTCGATTTTA CTCGAGCGTG CTTTCGTTGC TCGAGAGATT ACCTTGTTGA ATCCTGTTTG GATCCATTCC AAGAATACTG GTAAACCGTT TTACGCCATT CTTCATAGGA TTGATGTTGG TGTTGTTATT GATTTAGAGC CAGCTAGAAC TGAAGATCCT GCGCTTTCTA TTGCTGGTGC GGTTCAATCG CAGAAACTCG CGGTTCGTGC GATTTCGCAG TTACAGTCTC TTCCCGGGGG TGATATTAAG CTTTTGTGTG ATACTGTTGT GGAAAGTGTG AGGGACTTGA CTGGGTATGA TCGTGTTATG GTTTATAAGT TTCATGAAGA TGAGCATGGA GAAGTTGTAG CTGAGAGTAA GCGAGATGAT TTAGAGCCTT ATATTGGACT GCATTATCCT GCTACTGATC TTCCTCAAGC GTCACGGTTC TTGTTTAAGC AGAACCGTGT CCGAATGATA GTAGATTGCA ATGCCACACC CGTTCTTGTG GTCCAGGACG ATAGGCTAAC TCAATCTATG TGCTTGGTTG GTTCTACTCT TAGGGCTCCT CATGGTTGTC ACTCTCAGTA TATGGCTAAC ATGGGATCTA TTGCTTCTTT AGCTATGGCG GTTATAATAA ATGGAAATGA AGAAGATGGG AGCAATGTAG CTAGTGGGAG AAGCTCGATG AGGCTTTGGG GTTTGGTCGT TTGCCATCAC ACTTCTTCTC GCTGTATACC GTTTCCGCTA AGGTATGCTT GTGAGTTTTT GATGCAGGCT TTCGGTTTAC AGTTAAACAT GGAATTGCAG TTAGCTTTGC AAATGTCAGA GAAACGCGTT TTGAGAACGC AGACGCTGTT ATGCGATATG CTTCTGCGTG ACTCGCCTGC TGGAATTGTT ACACAGAGTC CTAGTATCAT GGACTTAGTT AAATGTGACG GTGCAGCATT TCTTTACCAC GGGAAGTATT ACCCGTTGGG TGTTGCTCCT AGTGAAGTTC AGATAAAAGA TGTTGTGGAG TGGTTGCTTG CGAATCACGC GGATTCAACT GGATTAAGCA CTGATAGCTT AGGCGATGCG GGGTATCCTG GTGCAGCTGC GTTAGGGGAT GCTGTGTGCG GTATGGCAGT TGCATATATC ACAAAAAGAG ACTTTCTTTT TTGGTTTCGA TCTCACACTG CGAAAGAAAT CAAATGGGGA GGCGCGAAGC ATCATCCCGA GGATAAAGAT GATGGGCAAC GAATGCATCC TCGTTTGTCC TTTCAGGCTT TTCTTGAAGT TGTTAAGAGC CGGAGTCAGC CATGGGAAAC TGCGGAAATG GATGCGATAC ACTCGCTCCA GCTTATTCTG AGAGACTCTT TTAAAGAATC TGAGGCGGCT ATGAACTCTA AAGCTGTGGA TGGTGCGGTT CAGCCATGTA GGGATATGGC GGGAGAGCAG GGGATTGATG AGTTAGGTGC AGTTGCAAGA GAGATGGTTA GGCTCATTGA GACCGCAACT GTTCCTATAT TCGCTGTGGA TGCCGGAGGC TGCATCAATG GATGGAACGC TAAGATTGCA GAGTTGACAG GTCTCTCAGT TGAAGAAGCT ATGGGAAAGT CTCTGGTTTC TGATCTGATA TACAAAGAGA ATGAAGAAAC TGTCAATAAG CTTCTTTCTC GTGCTTTGAG AGGGGACGAG GAAAAGAATG TGGAGGTTAA GCTGAAAACT TTCAGCCCCG AACTTCAAGG GAACGCGGTT TTTGTGGTTG TGAATGCTTG TTCCAGCAAA GACTACTTGA ACAACATTGT CGGCGTCTGC TTTGTTGGAC AGGACGTTAC TGGTCAGAAG ATAGTAATGG ATAAGTTCAT CAACATACAA GGAGATTACA AGGCTATTGT CCATAGCCCA AACCCGCTAA TCCCGCCAAT TTTTGCTGCT GATGAGAACA CGTGCTGCCT GGAATGGAAC ATGGCGATGG AAAAGCTTAC GGGTTGGTCT CGTAGTGAAG TGATTGGGAA AATGCTTGTC GGGGAAGTGT TTGGTAGCTG TTGCATGCTA AAGGGTCCTG ATGCTTTAAC CAAGTTCATG ATTGTATTGC ATAATGCGAT TGGTGGCCAA GAGACGGATA AGTTCCCTTT TCCGTTCTTT GACCGCAATG GGAAGTTTGT TCAGGCTCTA TTGACTGCAA ACAAGCGGGT CAGCCTCGAC GGAAAGGTTA TTGGGGCATT CTGTTTCTTG CAGATCCCGA GTCCTGAGCT GCAGCAAGCT TTAGCAGTCC AACGGAGGCA GGACACAGAG TGTTTCACGA AGGCAAAAGA GTTAGCTTAT ATTTGTCAGG TGATAAAGAA TCCTTTGAGC GGTATGCGTT TCTCAAACTC ACTGTTGGAG GCCACAGACT TGAACGAGGA CCAGAAGCAG TTACTTGAAA CAAGTGTTTC TTGCGAGAAA CAGATCTCAA GGATTGTCGG TGACATGGAT CTTGAAAGCA TTGAAGACGG TTCGTTTGAG CTAAAGAGGG CGGAGTTTTT CCTCGGAAGT GTCATAAACG CGATTGTAAG CCAAGCGATG TTCTTATTAA GGGACAGAGG TCTTCAGCTG ATCCGTGACA TTCCCGAAGA GATCAAATCA ATAGTTGTTT TTGGAGACCA GATAAGGATT CAACAGCTCC TGGCTGAGTT TCTGCTGACT ATAATTCGGT ATGCTCCATC TCAAGAGTGG GTGGAGATCC ATTTAAGCCA AGTTTCAAAA CAAGCGGCTG ATGGATTCAC CGCTATCCGC ACAGAATTCA GAATGGCGTG TCCAGGTGAA GGTCTGCCTC CAGAGCTAGT CCGAGACATG TTCCATAGTA GCAGGTGGAC AAGCCCTGAA GGATTAGGTC TAAGCGTATG TCGAAAGATT CTAAAGCTCA TGAACGGTGA GGTTCAATAC ATCCGAGAAT CAGAACGGTC TTATTTCCTC ATCATTCTCG AACTACCTGT ACCTCGAAAA CGCCCATTGT CAACCGCTAG TGGCAGCAGT GACATGATGT TGATGATGCC ATATTAGTCA ACATTTTCAG TTGGTATGAG AGTTTGTATC ATTGTACGTG TGTTTGTGTG TCTAACGACG TCTGAGGAGG ATAGAAAGTT TTTTAGTTTC CGGTGAGATT AGTAGAGAAG AGGGAGATTG TTTGCGTTCA GCTCAGGTCG CCGGGAAAAA AACGTAACAG TAGTTGTAGA GAATTTCAAG ACTTCTTTTG TTTGTGCTGT GTAAATTGAT AACTCCGAGA GAAACAAAAG AATGAGAAAA GAAGAGAG |
| Length | 3848 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_3: 22341997.. 22346485 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT2G18790.1 |
| Description | phytochrome B |
| TAIR curator summary | Red/far-red photoreceptor involved in the regulation of de-etiolation. Exists in two inter-convertible forms: Pr and Pfr (active). Involved in the light-promotion of seed germination and in the shade avoidance response. |
| Alias | [HY3][OOP1][PHYB][OUT OF PHASE 1][phytochrome B] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 4.24264 |
Ahg496615 | dentin sialophosphoprotein-related |
| 9.79796 |
Ahg487705 | flavonol synthase 1 |
| 10.7703 |
Ahg940275 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| 12.9615 |
Ahg920765 | alpha/beta-Hydrolases superfamily protein |
| 15.8745 |
Ahg478834 | Chaperone DnaJ-domain superfamily protein |
| 15.9687 |
Ahg488447 | stress-responsive protein (KIN2) / stress-induced protein (KIN2) / cold-responsive protein (COR6.6) / cold-regulated protein (COR6.6) |
| 19.6214 |
Ahg939656 | pseudo-response regulator 7 |
| 21.3542 |
Ahg483843 | pseudo-response regulator 9 |
| 23.622 |
Ahg921302 | gigantea protein (GI) |
| 24.3926 |
Ahg485476 | flavanone 3-hydroxylase |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|