Detail


ID : Ahg481620

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|481620|fgenesh2_kg.4__680__AT2G27230.2
Sequence
AAAGAAACAT TAAAGCAGAG AAACAAAGCA AAAAAAATCT CCATTTCATT TTTTCTTTTA TCGATGGCTG GTATTACTGG AATCTTAAAG CTTGAAGCTT GGAGCATCTT GTGAACAAGA AACAGTTTCT TTCGTTTTTC TTTTCTGGTT TTTGAGTTTT TTTTTTCTCT TCTTTATTAC CGGAAGTAAT GGCATGTCGG AGTATGATCG CTTTTAGTTT AGATCCTGAA AGAAAACAAA GTGGAGGACT TAGAACAAAA CAAGCTGGAA GAGGATCTTG CCGTGGAAGT TAGTCTTTGT TCAAATCCAT TTTCCTCTCA ATCTTCTTAA AGAATTTTGA AATTGCACTG TTGCAAGTGA AAAAGATTGT TCTTGTTGGA GCTTAAAGAA GAGAAAAGCT ATGGGAGTTT TACTAAGAGA AGCTTTGAGG TCTATGTGTG TTAATAATCA ATGGTCTTAT GCTGTTTTCT GGAAAATTGG CTGTCAAAAT TCTAGCTTGT TGATTTGGGA GGAATGCTAT AATGAAACTG CATCGAGCTC GAATCCTCGA AGACTTTGTG GACTCGGTGT TGATACACAA GGGAATGAGA AAGTTCAGTT GCTTACGAAC CGAATGATGT TGAACAATCG AATCATTTTG GTTGGTGAAG GACTAGTTGG CCGAGCTGCA TTTACTGGAC ATCATCAATG GATTCTAGCT AATAGTTTCA ACCGCGACGT TCATCCACCC GAGGTTATTA ATGAGATGCT TCTCCAATTC TCTGCTGGTA TTCAGACTGT TGCAGTTTTC CCGGTTGTTC CTCACGGTGT TGTTCAACTC GGTTCCTCTC TGCCTATTAT GGAGAATTTG GGGTTTGTGA ATGACGTGAA GGGTCTTATC CTGCAACTCG GATGTGTTCC CGGAGCGCTC TTATCTGAAA ACTACAGAAC ATATGAACCT GCTGCTGATT TTATTGGAGT GCCAGTGTCT CGGATAATAC CTTCTCAAGG ACACAAGATC CTCCAATCTT CGGCTTTCGT AGCTGAAACT AGCAAACAAC ACTTCAACTC TACTGGATCA TCAGATCATC AAAATGATCA AATGGTTGAA GAAGCTCCGT GTAATCTCGT GGATGAACAG ATCAAGCAAG GAGGATGGCA AAACACAACG GGTTTTCTAA CAGCTGGGGA AGTTGCAGTA CCTTCAAATC CAGATGCGTG GCTGAATCAA AACTTCTCTT GTATGTCTAA TGTGGATGGA GCAGAGCAAC AAATCCCATG CGAAGACATC AGTTCCAAAC ACTCGCTTGG AAGCGATGAC TTGTTTGATA TGTTGGGTTT GGATGATAAG AACAAAGGTT GTGACAACAG TTGGGGTGTT TCGCAGATGA GAACGGAAGT ACTCACTAGG GAGTTATCCG ACTTTCGGAT CATTCAAGAT ATGGACCCTG AGTTTGGTTC TTCGGGGTAT GAACTTTCAG GAACAGATCA TCTGTTAGAT GCCGTGGTCT CGGGTGCTTG CTCCTCCACA AAGCAGATCT CGGACGAAAC ATCTGAGTCC TGCAAAACCA CTTTGACTAA AGTTAGTAAT TCTTCGGTTA CCACGCCATC TCACAGTAGC CCTCAAGGTA ACCAGTTATT TGAGAAACAA CACGGGCAAC CAGTGGGGCC ATCATCGGTC TACGGGTCTC AGATCAGTTC TTGGGTTGAA CAAGCACACA GCTTGAAGCG CGAGGGCAGT CCAAGGATGA TGAATAACAA TAAGAACGAA ACTGCAAAAC CGGCTAATAA TCGTAAAAGA CTTAAACCAG GAGAGAACCC AAGACCAAGG CCTAAAGATC GCCAGATGAT CCAAGATCGT GTCAAGGAGT TGCGTGAAAT CATACCAAAC GGAGCAAAAT GTAGCATTGA TGCACTCCTG GAACGTACAA TCAAGCACAT GCTCTTCTTG CAAAATGTCT CGAAGCACTC TGATAAGCTG AAGCAAACTG GGGAATCCAA GATTATGAAA GAGGACGGTG GAGGAGCAAC ATGGGCTTTC GAAGTAGGGT CAAAGTCTAT GGTGTGTCCA ATTGTCGTAG AGGATATAAA CCCGCCTCGC ATTTTCCAAG TTGAGATGTT GTGTGAACAA CGAGGATTCT TCCTAGAAAT CGCGGATTGG ATCAGGAGCT TAGGAATGAC GATATTGAAG GGTGTCATCG AAACTCGACT TGACAAGATA TGGGCTCGCT TCACTGTTGA GGCGAATCGA GACATGACGA GAATGGAAAT ATTCATGCAA CTGGTGAATA TTTTGGAGCA GACAATGAAA TGTGGAGGAA ACTCTAAGAC TATTTTGGAT GGTATCAAAG CTACAATGCC TTTACCGGTT ACTGGTGGCT GTTCAATGTA ATGACACAAA TTGTTAACCG TACCGGATTG CTCCGGTTTT AATAAACCGG TATCATTAAA GCTTGATTCA TATAGAGGTT ACGAGCGGAC CGCTCTCAAG GATTTAGGCT CGCTATGACT AACTTAAAAA GTCAGTCTAA AACAGAGATG ATGATTTTTA AGTGTTTTTT TTTTTTGTAC ATTATGCGAA TTTTCATTTG TGTGGAATTT TTACTTTTTA AATTTTAATT CAGTTTTGGA CTTTGTAAAA TTTTTAGTTA AATTGTCTAA AATTAT
Length2646
Protein Sequence
Protein Residue
Map Locationscaffold_4: 10887368.. 10891119
Download Sequence
A.thaliana
AGI-codeAT2G27228.1
Descriptionconserved peptide upstream open reading frame 6
TAIR curator summaryUpstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF6 represents a conserved upstream opening reading frame relative to major ORF AT2G27230.1
Alias[CPuORF6][conserved peptide upstream open reading frame 6]
Gene coexpression
MR
MR Locus Description
2.44949 Ahg496192 auxin response factor 4
8.24621 Ahg946015 proline-rich spliceosome-associated (PSP) family protein
9.21954 Ahg494944 cytochrome B5 isoform D
15.8114 Ahg323420 ataxia-telangiectasia mutated
20.4939 Ahg493421 kinase interacting (KIP1-like) family protein
25.4558 Ahg920146 auxin signaling F-box 3
27.1109 Ahg493972 DegP protease 9
27.4955 Ahg477830 acyl-CoA binding protein 4
32.8634 Ahg323092 aldehyde oxidase 2
34.0734 Ahg950941 TUDOR-SN protein 2
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression