| Annotation |
|---|
| Description | jgi|Araly1|482682|fgenesh2_kg.4__1742__AT2G36990.1 |
| Sequence |
GTGTGTCGCC TTATCTGTTC GTCATGGCTC TGTAGAGTAG CCTCATGTTC TTATTCTTCT TCTTCCTTAG CCATTCGTGG AAGCAAAAAC AGAGTCTTTT TTACTTTGGT GATTCTGTGA AATGGAAGCT ACGAGGAACT TGGTTTCTTC GTCTCCTTCG TTTCAGACAA AGACCCATCT CAAGAGCTAC TCTTCTCCTT CCTCAGTAGT GATGCTTCAT GAGCAAACAA CAACTCCTGT AGTTAACTCA CGTCATCTCA ATTCTCTATC TCGACATTTT CCTGCGTCGG TTCTCTCACA GGAGCCACGG GAAGAGTCTA GGCCTTTGTC ACATGCGTTA AGGGAAGACA GAACATCCCA GTTGACTCTG GAGAGGAGGC AGTTTGATGA ATTGGTTTCA TCTCGAGAAG ATGAGAAATT TGAACAGCAA CTTCTTCACT CTGCTGGTTT ATGGAATTTA TTGATATCTC CTTTAACAGC TGAAACGAAA TTGCCGCCAG TTGTACCGCC CTTAGCAGAT GCAGAGCTTT GTGATATTGT TGCACTAGCT CAGAAGGCTT TATCAGCTTC AAAACAAGCT GCATTGTTAG CTGACGACAC TGAAGCTAAT CCATCTGACA ACACCAGGGG TTCTCTCTCC ACTAGCTCTT CTATGTCCTT ACCGGAAAAG GGAGCCATAG TAAGATCGAA GCGGCAGCTG GAGAGACGAG CAAAGAACAG ACGGGCTCCT AAATCAAACG ATGTGGACAA TGAGGGTTAT GTTCCTCAGA AAATTAATGC CAAGAAAAAG TTTAAACAAG GGGTTGATAC TGATGATGCG CTTCAGCTCT TCTTGTGGGG ACCTGAGACA AAACAACTTC TGACTGCTAA AGAGGAAGCT GAGCTGATAT CACATATACA GCATTTATTA AAGTTGGAGA AGGTAAAGAC TAAACTTGAA TCTCAAAACG GCTGCGAACC AACAATAGGC GAGTGGGCTG AAGCTATGGG GATAAGTTCC CCTGTCTTAA AATCTGAAAT CCACCGTGGT AGAAGCAGCC GGGAAAAGTT GATTACAGCA AACCTACGTC TGGTAGTCCA TATAGCTAAA CAATATCAGA ATCGTGGGCT CAACTTTCAG GACTTATTGC AGGAAGGAAG CATGGGGCTA ATGAAAAGTG TAGAGAAGTT CAAACCGCAA TCTGGATGCA GATTTGCTAC TTACGCCTAC TGGTGGATTC GACAATCCAT AAGAAAGTCT ATATTTCAAA ACTCCAGAAC AATCCGTTTA CCGGAGAACG TATACATGCT ACTTGGAAAA GTATCCGAAG CCAGGAAAAC GTGCGTGCAG GAAGGAAACT ACCGTCCAAG TAAAGAGCAA CTAGCAGGCC ACGTTGGGGT TTCAACAGAG AAGCTGGATA AACTGCTGTA CAATACAAGA ACACCTCTTT CAATGCAACA ACCCATTTGG TCTGATCAAG ACACCACCTT TCAGGAAATA ACACCAGACA GTGGGATTGA GACACCAACG ATGAGCGTGG GGAAGCAGAT GATGAGGAAC CATGTACGGA ATCTCCTAAA TGTACTGAGC CCAAAGGAGA GAAGGATCAT CAAGCTGAGA TTTGGGATTG ATGGCGGTAA ACAGAGATCG TTATCAGAAA TAGGAGAGAT TTACGGACTG TCGAAGGAGA GGGTAAGGCA GTTAGAGAGC CGGGCATTGT ACAGGCTTAA GCAGAACATG AACAGCCATG GACTCCATGC TTATGCTGAT TTGCTTGTCT AGCTCATGGA GATATTGGTT TCTTCTATTA ATAATGGTAT GTGTATACAA AATATACTTT TGTTGATATT CTGAGGAATA GTGTTTTCTT GGATAAGAGT TTTGGGTAAT TAAGGAAAAA GAGGGATTAC CACACTTTGA TAATTTGTTT ATTTCTGATT GATGTGTAAT TGTGCATATC TGTTTTACTT CTTTTAATCA AATTT |
| Length | 1965 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_4: 16709348.. 16712217 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT2G36990.1 |
| Description | RNApolymerase sigma-subunit F |
| TAIR curator summary | Encodes a general sigma factor in chloroplasts and is probably responsible for the recognition of sigma 70 type standard bacteria-type multi-subunit RNA polymerase (PEP) promoters in young cotyledons. It is a substrate for regulatory phosphorylation by cpCK2, a nuclear-coded plastid-targeted casein kinase 2, that has been implicated as a key component in plant sigma factor phosphorylation and transcriptional regulation. |
| Alias | [ATSIG6][SIG6][SIGF][SOLDAT8][SIGMA FACTOR 6][RNApolymerase sigma-subunit F] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 14.0712 |
Ahg482332 | Ribosomal protein S5 family protein |
| 14.7986 |
Ahg481233 | other RNA |
| 16.4317 |
Ahg348440 | chloroplast RNA-binding protein 29 |
| 18.4391 |
Ahg485130 | DnaJ/Hsp40 cysteine-rich domain superfamily protein |
| 24.98 |
Ahg476441 | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| 31.1127 |
Ahg495607 | trigger factor type chaperone family protein |
| 32.5576 |
Ahg484431 | glyceraldehyde 3-phosphate dehydrogenase A subunit |
| 35.623 |
Ahg489169 | photosystem II stability/assembly factor, chloroplast (HCF136) |
| 37.1349 |
Ahg938046 | UbiA prenyltransferase family protein |
| 37.47 |
Ahg483405 | Ribosomal protein L3 family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|