| Annotation |
|---|
| Description | jgi|Araly1|483030|fgenesh2_kg.4__2090__AT2G39930.1 |
| Sequence |
ACACTTCTTC GTCTCTCTTT CACTCCTTTT GGAAGCTCTC TTTTCGAGCT TCCATGGATT CCATCAAATG CAGTTCCAGT TTTCTTCATC GCACCAAGCT CAACATTCTC TTCTCTAACC ACGCCTTTCC TAAAATATCC GCACCCAATT TCAAGCGTCT CTTCCGACCA ATTTCGATTT CCGCAAAGGC TAGACGAAGC AGCGAAGCTG AAAGTATCGC CGTAGTAGAG AAACCTCTTA AATCAGAGAG ATTTCTCGTC TCCGATGGAC TTCCTTCTCC ATTCGGAGCC ACTGTCAGAG ACGACGGCGT CAATTTCTCT GTTTACTCTA CAAACTCCGT TTCCGCTACC ATCTGCTTGA TTTCTCTCTC CGATCTCCGT CAGAACAAAG TGACGGAGGA GATTCAGCTA GATCCATCAA GAAATAGAAC CGGCCATGTT TGGCATGTGT TCTTGAGAGG GGATTTCAAA GATATGTTGT ATGGTTACAG ATTTGATGGC AAGTTTTCTC CTGAAGAAGG TCATTATTAT GATTCCTCCA ACATTTTATT GGATCCTTAC GCAAAGGCAA TTATAAGCAG AGATGAGTTT GGAGTTTTGG GACCTGATGA AAATTGTTGG CCTCAAATGG CGTCTATGGT TCCCACTCGT GATGAAGAGT TTGATTGGGA AGGGGATATG CATCTGAAGC TTCAACAGAA GGATCTTGTT ATATATGAAA TGCATGTGCG AGGTTTCACA AGGCATGAAT CTAGCAAAAT TGAATTCCCT GGCACATACC AAGGTGTTGC AGAGAAGCTT GACCATTTGA AGGAGCTTGG TATAAATTGC ATAGAATTAA TGCCATGCCA CGAGTTTAAT GAGCTGGAGT ATTACAGCTA CAATACGATT CTGGGAGACC ACAGGGTAAA TTTTTGGGGT TACTCGACCA TTGGGTTCTT CTCGCCCATG ATCAGATACG CGTCGGCAAA TTCTAACAAT TTTGCTGGAA GAGCCATAAA TGAGTTCAAA ATTCTTGTTA AAGAAGCACA TAAACGAGGA ATTGAGGTAA TCATGGATGT CGTGTTGAAC CACACAGCTG AAGGGAATGA AAAAGGGCCC ATTTTCTCAT TTAGAGGAGT TGATAACAGT GTCTATTACA TGCTTGCTCC AAAGGGCGAG TTCTATAATT ATTCAGGCTG TGGTAATACA TTCAACTGCA ATCATCCCGT GGTGCGTCAA TTCATAGTGG ATTGCCTGAG ATATTGGGTT ACAGAAATGC ATGTCGACGG CTTCCGCTTT GATCTTGGTT CAATCATGTC AAGGAGCAGC AGCCTTTGGG ATGCAGCCAA TGTTTATGGG GCTGATGTAG AAGGTGACTT GCTGACCACT GGTACTCCTA TTAGCTGCCC TCCAGTAATT GACATGATAA GTAATGATCC AATACTCCGC GGTGTTAAGC TAATAGCTGA AGCATGGGAT GCGGGTGGGC TATACCAAGT TGGCATGTTT CCACACTGGG GTATTTGGTC TGAGTGGAAT GGAAAGTTCC GGGATGTTGT GAGACAGTTC ATAAAAGGCA CCGATGGCTT TTCTGGTGCT TTTGCTGAAT GTCTTTGTGG AAGCCCAAAT TTGTACCAGG GAGGTAGGAA ACCTTGGAAC AGCATCAATT TTATATGTGC GCATGATGGT TTTACGTTGG CAGATTTAGT AACTTACAAC AATAAGAATA ACTTGGCAAA TGGAGAAGAG AATAATGATG GAGAGAATCA CAATTACAGC TGGAACTGTG GAGAGGAGGG AGACTTTGCG AGTATCTCGG TGAAGAGACT AAGGAAACGA CAGATGCGAA ATTTCTTTGT TTCCCTCATG GTTTCCCAAG GTGTCCCAAT GATCTACATG GGAGATGAAT ATGGCCATAC GAAAGGGGGA AACAACAACA CTTATTGCCA TGACAACTAT ATGAACTATT TTCGGTGGGA TAAAAAGGAA GAAGCACATT CTGACTTCTT CAGATTCTGC CGTCTTCTTA TCAAGTTTCG TGATGAATGT GAATCACTTG GCCTGAATGA TTTCCCAACA GCAAAGCGTC TGCAGTGGCA TGGTCTTGCT CCTGAGATCC CAAATTGGTC TGAAACAAGT CGATTTGTTG CATTTTCACT GGTCGATTCT GTGAAGAGAG AAATCTATGT GGCTTTCAAC ACTAGTCATT TAGCCACACT TGTTTCTCTG CCTAACAGGC CTGGATACCG ATGGGAGCCA TTTGTAGACA CGAGCAAACC GAGCCCATAC GACTGCATAA CACCGGATCT CCCAGAGAGA GAAACGGCGA TGAAGCAGTA TAGGCACTTC TTAGATGCAA ATATGTACCC AATGCTCAGT TACTCTTCCA TCATCCTCCT TCTTTCACCA ATTGAAGACA CCTGAGTTTG CGTGATCCCC CTCCAAAAGT GCGTTAGAGA AATCACAAAA TATGGGGGAA TCTTCTCAAA TGTGAAATGA GATGCATATT ACGACAACTA TTTCGTTACC TGAATAATGA TATTATTGTA AAGGTTCTTT TATGTTTAGA AGAATCTGAA TGGGGTACCT TTGGTCGGTT TCATTGTAAA TAGATTCCTT TATTGTCTGT TAATTTAATC AAAGCTTTGT TACATGCGTT TTCGAAATTC GTGTAAGAAC A |
| Length | 2661 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_4: 18410066.. 18416741 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT2G39930.1 |
| Description | isoamylase 1 |
| TAIR curator summary | Encodes an isoamylase-type debranching enzyme. Mutations in this gene cause the loss of detectable isoamylase activity and the disruption of normal starch structure. Mutants have reduced starch content and abnormally structured amylopectins and phytoglycogens. It has been postulated that AtISA1 interacts with AtISA2 to form the Iso1 complex. |
| Alias | [ATISA1][ISA1][ARABIDOPSIS THALIANA ISOAMYLASE 1][isoamylase 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1.41421 |
Ahg470308 | debranching enzyme 1 |
| 3.16228 |
Ahg908972 | conserved peptide upstream open reading frame 32 |
| 4.89898 |
Ahg478435 | dual specificity protein phosphatase (DsPTP1) family protein |
| 7.61577 |
Ahg488189 | alpha-N-acetylglucosaminidase family / NAGLU family |
| 7.74597 |
Ahg323006 | Glycosyl transferase, family 35 |
| 11.4018 |
Ahg495608 | microtubule-associated proteins 65-1 |
| 11.4891 |
Ahg490898 | Cystathionine beta-synthase (CBS) family protein |
| 13.1149 |
Ahg493370 | beta-amylase 5 |
| 17.3205 |
Ahg471306 | MATE efflux family protein |
| 17.4929 |
Ahg490316 | UDP-xylosyltransferase 2 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|