Detail


ID : Ahg483746

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|483746|fgenesh2_kg.4__2806__AT2G46020.1
Sequence
ATGCAATCTG GAGGCAGTGG CGGAGGGCCC GCTCGGAATC CGCCCATGGG TCCGGCTGGT CGGACTGCGT CCACGTCATC CGCTGCTTCT CCTTCTTCTT CCTCTTCCTC CGTGCAGCAA CAACAGCAAC AGCAGCAGCT GGCGTCTAGG CAGCAACAGC AGCAGCAGAG AAACTCAGAT GCAAACGAAA ACATGTTTGC ATATCATGCT GGTGGGGTTC AGGGAATGAT GGGAGGTGGC AACTTTGCTT CGTCTTCTGG CTCTATGCAA ATGCCTCAGC AGTCTAGGAA ATTCTTTGAG TCTCCTCAAC AACAACAACA ACAGCAGCAA CAGGGCTCTT CTACCCAAGA GGGCCAGCAA AGTTTTAATC CAATGCAGCA AGCGTATATT CAGTTTGCTA TACAGGCTCA GCAACAAAAA GCACAGCAGC AAGCTAGAAT GGGAATGATA GGTTCATCAA GTGTCGGAAA AGATCAAGAT GCACGGATGG GAATGTTGAA TATACAAGAT TTGAATCCGT CTAGTCAGGC CCAGGCCTCA TCGTCTAAGC CATCGGGAGA TCAGTTTGGT CGCGGTGAAA GGCAGATGGA ATCAGGTTCT CAGCAAAGGA ACGAAACAAA TTCTCATCCT CAGCAGCAGG TGGGTACCGG ACAACTAATA CCTGGAAATA TGATAAGGCC AATGCAGGCA CCACAGCCTC AACAGCTTAT CAATAATATG GGAAATAACC AACTCGCATT TGCACAACAG TGGCAGGCAA TGCAGGCATG GGCGCGTGAG AGGAATATCG ATCTCTCACA TCCTGCCAAC GCCAGCCAAA TGGCACACAT CCTTCAGGCA AGAATGGCTG CCCAACAGAA AGTTAGTGAA GGCAATGTGG CTTCACAGGC ACCTTCTATT CCAATCTCTA GCCAGCCGGC TTCATCTTCG GTTGTTCCAG GTGAGAATTC ACCGCGTACC AACTCTGCTA GTGATATCTC TGGGCAGTCA GGATCAGCAA AGGCCAGGCA TGCAATATCT ACTGGCTCAT TTGCTTCGAC TTCCAGTCCC AGAATGGTCA ATCCTGCTAT GAATCCCTTC TCCGTCCAAG GGAGAGATAA TCCAATGTAT CCTCGACATT TAGTTCAGCC TACAAATGGG ATGCCCTCAG GAAATTCCCT GCAGACTTCT GCAAATGAGA CTCTTGTTTT GGATCAGAAT GTGTCTACAA AAAAAAGTTT AGGTCCTGCT GAACATTTGC AAATGCAGCA GCCTAGGCAA CTGAATGCAC CGACTTCAAA TTTACTAGCG CCATCTGATA CTGGTCCACT CAGTAATTCT TCCTTTCAGA GTGGACAGGG GACCCAACAA GCACAGCAGC GAGCAGGATT TACCAAACAG CAACTCCATG TTCTCAAAGC CCAGATACTG GCATTTAGGC GTTTGAAGAA AGGGGAAGGT TCTTTGCCTC CAGAGCTTCT TCAAGCTATT GCTCCACCAC CGCTTCAACT GCAGACACAG AGGCAAATAA CTCCTGTTGG AGGACAAGTT CAGGATAGAG CTTCAGAACA AACTGGAGAA GACCAAGCAA GGTCGCTAGA GTGTGGCAAA GAGTCTCAGG CTGCTGCTTC TTCAAATGGA CCGATTTTTT CTAAAGAGGA AGATAATGTT GGAGATACAG AAGTAGCTTT GACAACAGGC CACAGCCAAT TATTTCAAAA CCTGGGAAAA GAAGCTACTT CTACTGACGT GGCTACGAAA GAGGAGCAAC AAACTGATGT ATTCCCTGTT AAGTCAGACC AAGGAGCAGA TTCTAGTACT CAAAAGAATC CTAGAAGTGA TTCTACAGCT GATAAGGGAA AGGCTGTTGT ATCTGATGGA AGCCAATCTA AGGTTCCTCC ACAAGCAAAC TCTCCCCAGC AGCCCAAGGA TACAGCCTCT GCCAGGAAAT ATTATGGACC GTTGTTTGAT TTTCCCTTTT TCACTCGAAA ACTTGATTCT TATGGGTCTG CAACAGCCAA TGCCAATAAC AATCTCACAT TAGCATATGA TATTAAAGAT CTGATTTGTG ATGAAGGTGC AGAGTTCCTT AGTAAGAAAA GAACAGACAG TTTGAAGAAG ATAAATGGTC TGCTAGCAAA AAATTTAGAA AGGAAAAGGA TTAGGCCTGA TCTTGTTTTA CGGCTTCAAA TTGAAGAGAA AAAGCTTAGG CTATCGAATC TTCAGTCTCG TGTTAGAGAG GAAGTGGATC GACAACAACA GGAGATAATG TCCATGCCCG ATAGGCCATA CCGCAAATTT GTGAGGTTGT GCGAACGGCA ACGCCTTGAA ATGAATAGAC AAGTACTGGC CAACCAGAAA GCTGTTAGAG AGAAGCAGCT GAAAACCATT TTTCAGTGGC GTAAGAAACT CCTTGAGGCT CACTGGGCTA TACGTGATGC ACGCACTGCT CGTAACAGGG GAGTGGCCAA ATACCATGAA AAGATGTTGA GAGAGTTTTC GAAGAGAAAA GATGATGGCC GGAACAAAAG GATGGAGGCC TTGAAGAATA ATGATGTAGA AAGGTACAGG GAGATGTTGC TGGAACAGCA AACAAATATG CCTGGTGATG CTGCTGAAAG ATATGCTGTT CTCTCTTCAT TTTTGACCCA AACCGAAGAT TATCTTCATA AACTTGGAGG TAAGATTACT GCCACAAAAA ATCAACAGGA AGTGGAGGAG GCAGCGAATG CTGCAGCAGT AGCAGCCAGA TTGCAGGGCT TGTCAGAAGA AGAGGTCAGG GCAGCAGCTA CTTGTGCTCG AGAAGAAGTT GTGATCAGAA ATAGATTTAC GGAAATGAAT GCGCCAAAAG AAAATTCATC TGTCAACAAG TATTATACTC TGGCTCATGC TGTAAATGAA GTGGTTATAA GACAACCTTC AATGCTTCAG GCTGGAACTT TGCGTGATTA CCAGCTGGTT GGATTACAAT GGATGCTATC GCTGTATAAT AACAAATTAA ATGGGATCTT GGCTGATGAG ATGGGTCTTG GAAAAACTGT GCAGGTAATG GCACTGATTG CTTACCTTAT GGAGTTTAAG GGGAATTATG GACCGCATCT CATCATCGTT CCCAATGCTG TTCTGGTGAA TTGGAAGAGT GAACTCCATA CTTGGCTGCC ATCTGTTTCA TGCATATATT ATGTTGGTAC AAAGGATCAA CGTTCAAAAT TGTTCTCTCA GGAGGTTTGC GCCATGAAGT TCAATGTCCT CGTTACGACT TATGAGTTCA TTATGTATGA TCGATCAAAA CTCTCAAAAG TTGACTGGAA ATATATTATA ATTGATGAAG CACAACGGAT GAAGGACAGA GAATCTGTTT TGGCCCGAGA TCTTGACCGG TATCGCTGCC AGAGGAGATT ACTTCTCACT GGAACACCTT TGCAGAACGA TCTGAAAGAG CTTTGGTCAC TATTGAACCT TCTCCTTCCT GATGTCTTTG ACAATCGAAA AGCATTTCAT GATTGGTTTG CGCAACCCTT TCAAAAAGAA GGTCCTGCGC ATAATATAGA GGATGACTGG CTGGAGACTG AAAAAAAGGT TATAGTCATT CACAGACTTC ATCAAATTTT AGAGCCATTC ATGCTCAGAC GCCGTGTTGA GGATGTGGAA GGGTCACTTC CTGCTAAGGT TTCTGTAGTT TTAAGGTGTA GAATGTCTGC TATTCAGAGT GCCGTTTATG ATTGGATTAA AGCGACTGGA ACTCTTAGAG TTGATCCAGA CGATGAAAAA CTTAGGGCCC AGAAGAATCC AATATACCAA GCCAAGATAT ATAGAACTTT AAATAATAGG TGCATGGAGT TGAGGAAAGC CTGCAATCAT CCTTTACTCA ACTATCCATA TTTCAACGAC TTTTCCAAAG ATTTCCTCGT AAGGTCATGT GGAAAATTGT GGATTCTGGA TAGGATCCTT ATAAAGCTAC AGAGGACAGG CCATCGTGTA TTGCTCTTCA GTACAATGAC TAAACTTCTT GATATCTTGG AAGAGTATCT ACAATGGAGA AGGCTTGTAT ACAGAAGAAT AGATGGGACT ACCAGCCTAG AAGATCGGGA ATCAGCTATT GTGGACTTCA ATGATCCTGA TACGGATTGC TTTATCTTCT TGCTTAGTAT ACGTGCAGCT GGACGGGGTC TCAACCTTCA GACTGCTGAC ACAGTTGTGA TATATGATCC GGATCCAAAT CCCAAGAATG AGGAACAAGC AGTTGCCAGA GCCCATCGTA TAGGGCAGAC AAGGGAAGTA AAAGTGATTT ATATGGAGGC AGTTGTTGAA AAAATCTCCA GCCATCAAAA GGAGGACGAG CTTAGAAGTG GTGGTTCAAT AGACCTAGAG GATGACATGG CTGGGAAGGA CCGATATATA GGATCTATAG AGGGTCTCAT AAGGAATAAT ATTCAACAGT ATAAGATTGA CATGGCTGAT GAGGTCATTA ATGCTGGGCG TTTTGACCAA AGGACAACTC ATGAAGAGCG ACGAATGACA TTGGAGACTC TATTGCATGA CGAAGAGAGA TATCAAGAAA CTGTCCATGA TGTACCTTCT CTGCATGAGG TGAACAGGAT GATTGCCAGA AGCGAAGAGG AAGTTGAGTT ATTTGATCAG ATGGATGAAG AATTTGACTG GACGGAGGAG ATGACTAATC ATGAGCAGGT GCCTAAGTGG CTTCGAGCTA GTACCAGAGA GGTGAATGCT ACTGTTGCTG ATTTGTCTAA GAAACCTTCA AAGAACATGT TGTCTAGCAG TAATCTGATT GTGCAACCTG GTGGACCGGG AGGTGAGAGA AAAAGGGGGC GGCCCAAGAG CAAAAAGATT AACTACAAGG AAATTGAAGA TGACATTGCA GGTTACTCTG AGGAAAGCTC TGAGGAAAGG AACATTGATT CTGGGAATGA AGAAGAGGGA GATATTCGAC AATTTGATGA TGATGAACTT ACGGTCGCTC TTGGAGATCA CCAAACCAAC AAGGGAGAAT CTGATGGAGA GAACCCTGTC TGTGGTTATG ATTATCCTCC GGGTTCTGGT AGTTATAAAA AAATTCCTCC TCGTGATGAT GCCGGTTCTT CAGGATCTTC TCCAGAGAGC CATAGATCGA AAGAGATGGC ATCTCCTGTT TCTTCACAAA AGTTTGGCTC TTTGTCTGCA TTGGACACTA GGCCAGGTTC TGTCTCAAAA AGACTGCTGG ATGACCTAGA AGAGGGGGAA ATAGCAGCAT CAGGGGATTC TCACGTAGAT CTCCAACGAT CAGGAAGTTG GGCCCATGAC CGTGATGAAG GGGATGAAGA ACAGGTTTTG CAACCTACGA TAAAACGAAA ACGGAGTATT CGTCTACGAC CCCGTCAAAC GGTAGACAGA GTTGACGGTA GTGAGATGCC TGCAGCTCAG CCATTACAAG TTGATCGTAG CTACCGATCA AAGTTAAGGA CAGTTGTTGA CTCGCATGGT TCAAGACAAG ATCAGAGTGA TTCGTCCTCT AGACTTAGGA GTTTACCTGC AAAGAAGGTA GCTAGTACTT CCAAACTCCA TGTATCATCA CCAAAATCTG GTAGATTGAA TGCCACACAG CTTACCGTGG AGGATAACGC TGAAGCTTCC AGAGAAACAT GGGATGGAAC TAGTCCTATT GGCTCTTCAA ATACTGGTGC AAGAATGTCC CACATCATAC AGAAACGGTG CAAAAACGTG ATTAGCAAGC TCCAAAGGAG AATCGACAAG GAAGGTCAGC AGATTGTACC TATGCTGACA AATTTGTGGA AGAGAATTCA GAATGGTTAT GCAGCTGGAG GTGTAAATAA CCTTTTGGAA CTACGAGAGA TAGACCAGCG AGTAGAAAGA CTAGAGTACG CAGGAGTTAT GGAACTCGCA TCTGACGTGC AGTTAATGCT AAGGGGAGCA ATGCAATTCT ATGGATTTTC ACATGAGGTG AGATCTGAAG CAAGGAAGGT TCACAATCTG TTCTTTGATC TATTAAAGAT GTCTTTCCCA GACACAGATT TCCGGGAAGC AAGGAATGCT CTTTCCTTTT CTGGCCCAAT CCCAAATTTG GTGTCTACAC CATCCCCAAG AGGAGCAGGC ATTAGCCAAG GCAAGAGGCA AAAGTTGGTA AACGAGGCGG AACCCGAGCC AAGCTCTCCT CAGAGATCTC AACAACGTGA GAACTCAAGG ATCAGAGTAC AGATACCGCA GAAAGAAACA AATCTTGGGG GCACAACAAG CCACACTGAT GAATCCCCAA TTTTAGCTCA TCCAGGGGAA TTAGTTATCT GCAAGAAGAA GAGGAAAGAC CGAGAGAAGT CTGCTCCGAA AACCCGAACT GGTGGCTCCA GCAGCCCAGT TTCACCACCT CCAGCTATGA TTGGTCGTGG TCTTAGAAGT CCTGTGTCTG GTGGAGTTCC AAGGGAAACA AGGCTAGCAC AGCAGCAGCG CTGGCCAAAC CAACCCACTC ATCCAAACAA CAGCGGTGCG GCCGGTGATT CCGTGGGATG GGCAAATCCG GTGAAGAGGT TAAGGACAGA TTCTGGTAAA AGACGGCCTA GCCATTTATA G
Length6561
Protein Sequence
Protein Residue
Map Locationscaffold_4: 21217648.. 21226091
Download Sequence
A.thaliana
AGI-codeAT2G46020.2
Descriptiontranscription regulatory protein SNF2, putative
TAIR curator summaryEncodes a SWI/SNF chromatin remodeling ATPase that upregulates transcription of all three CUC genes and is involved in the formation and/or maintenance of boundary cells during embryogenesis. Also mediates repression of expression of seed storage proteins in vegetative tissues. Interacts strongly with AtSWI3C, also with AtSWI3B, but not with AtSWI3A or AtSWI3D.
Alias[ATBRM][BRM][CHA2][CHR2][ARABIDOPSIS THALIANA BRAHMA][BRAHMA][CHROMATIN REMODELING 2]
Gene coexpression
MR
MR Locus Description
1.73205 Ahg948606 chromatin remodeling 4
2 Ahg489126 Adaptor protein complex AP-2, alpha subunit
2 Ahg486240 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein
2.23607 Ahg935153 multiprotein bridging factor 1A
2.44949 Ahg474270 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein
4.24264 Ahg480691 Phosphatidylinositol 3- and 4-kinase family protein with FAT domain
4.47214 Ahg939856 Protein of unknown function (DUF668)
5.65685 Ahg493416 20S proteasome beta subunit D1
7.93725 Ahg488829 Telomerase activating protein Est1
9.32738 Ahg934902 cytochrome P450, family 98, subfamily A, polypeptide 3
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression