| Annotation |
|---|
| Description | jgi|Araly1|490770|fgenesh2_kg.7__203__AT4G39850.1 |
| Sequence |
TCTCTCTCTC TCTCTCTCTC TCGATTTGGG GAGTTCCGTT ACGGTGGACT AGTACGTCTC GTTGCCGTTG GTGGCGGAGT CGGAATTAAT TCCTCGGCGT TGAGATTCAC ATGGTCTAGA ATTCGAACTT AGTTGGTGGT GGTGTTGTTA CGATTTCCGA TTTGTCGAGT TTTTTTTTAT TAGGTTGAAT TTAGCTTCTG TTGCAATTTA TTTCTCCTGG AGACACTCTC ATACTGAGGT AATTCTTCTC AGGTGTTTTG TACACTTGTT GTCAAGAAGA AACCAGTTTT GGTTCTGATT AATCGTTGGT TGGAGAATAC TCAATTCCAG CCATGCCTTC ACTCCAACTG TTGCAGTTAA CTGAGCGGGG TCGGGGTCTT GTAGCGTCAA GACGGAAATC TATACTGCTT GCGGCTGGGA TTGTAGCTGC TGGTGGAACT GCTGTTTACC TGAAATCAAG GGTCAGCTCC CCAAGGCCTG ATTCTTCGCG TCATTGCAAT GGTCAGAGTG ATGATGATGA GGCATTGGAA AAGCTGACAG GAAATGATAA AAATGCAAAG ATAACCATGA AAAAGAAGAA AGGAGGAGGG TTGAAGTCTC TTCAGGTTCT GACTTCTATT CTTCTGTCTC AGATGGGAAA AATGGGTGCC AGGGATCTTT TGGCACTAGT CGCCACAGTG GTTTTCAGAA CAGCTTTGAG CAATAGATTG GCAAAAGTGC AAGGTTTCCT TTTCCGTGCT GCTTTCTTAA GGCGTGCGCC ACTGTTTCTA CGACTCATCT CCGAGAATAT TATGTTGTGT TTCATGCTAT CGACGTTGCA CTCTACATCA AAGTACATAA CTGGGGCCTT GAGTTTGCGA TTCAGAAAGA TATTGACGAA GATTATCCAT TCACATTATT TTGAGAATAT GGTTTATTAT AAAATATCAC ACGTGGATGG TCGGATAACG CACCCCGAGC AGCGAATTGC CAGCGATGTG CCAAGATTCT CCTCAGAGTT AAGCGATCTT ATACTGGATG ATTTGACGGC GGTTACTGAT GGAATTTTGT ATGCATGGCG CCTGTGTTCA TATGCTAGTC CAAAATACAT CTTCTGGATA CTGGCCTATG TACTGGGGGC TGGGACGGCG ATAAGGAACT TTTCTCCTTC TTTTGGGAAA TTGATGTCCA AGGAACAGCA GTTAGAAGGG GAGTACCGGC AACTTCATTC ACGCTTAAGG ACTCATTCGG AAAGCATAGC ATTTTATGGT GGGGAAACCA GGGAAGAATC TCATATACAA CAAAAGTTCA AGAATCTTGT TAGCCATATG AGCCATGTGC TTCATGATCA CTGGTGGTTT GGTATGATCC AAGATTTTCT GCTGAAGTAT CTTGGTGCCA CAGTTGCAGT TATTCTGATT ATCGAACCAT TCTTCTCTGG GCATCTAAGA CCTGACGACT CGACCTTAGG AAGAGCCGAG ATGCTAAGCA ATATAAGATA TCACACTAGT GTCATTATAT CTCTCTTTCA GGCGTTGGGA ACACTTTCTA TAAGTTCCAG GCGGCTCAAC CGACTCAGTG GTTATGCTGA CCGTATCCAC GAGTTGATGG CTGTCTCAAG AGAACTCAGT GGTGATGAGA AATCATCTTT CCAGAGAAAT AGAAGCAGAA ATTACCTAAG TGAAGCTAAT TATGTTGAGT TTTCCGATGT CAAGGTTGTT ACTCCAACCG GAAATGTTTT GGTGGAGGAT CTCACCCTTC GAGTTGAGCA AGGGTCTAAT CTTCTGATTA CAGGTCCTAA TGGAAGTGGC AAGAGTTCCC TTTTCCGAGT ATTAGGAGGT CTATGGCCCC TGGTGTCTGG GCATATTGTG AAGCCAGGAG TTGGTTCTGA TCTTAACAAG GAGATCTTCT ACGTGCCGCA ACGGCCTTAT ATGGCAGTAG GAACACTTCG TGACCAGTTA ATATATCCTC TTACTTCTGA CCAAGAGAGT GAACCGCTCA CTGAGATTGG AATGGTGGAG CTATTGAAAA ATGTTGATCT AGAATATTTA TTGGATCGCT ACCAACCTGA AAAAGAGGTT AATTGGGGTG ACGAATTATC ACTTGGAGAG CAACAGAGAT TGGGGATGGC CAGACTATTC TACCACAAAC CCAAGTTTGC AATTCTAGAT GAATGCACAA GTGCTGTCAC AACTGATATG GAAGAACGCT TTGCCGCCAA GGTTCGAGCT ATGGGAACTT CTTGCATAAC AATTTCCCAT CGTCCAGCGC TTGTTGCATT CCATGATGTT GTTCTGTCAT TAGACGGTGA AGGGGGTTGG AGTGTTCACT ACAAGAGGGA TGACTCTGCC CTTCTGACGG ATGCTGAAAT TGATTCAGCG AAAATTTCAG ATACTGATCG GCAAAATGAT GCGATGGTTG TTCAAAGAGC GTTTGCTGCA GCTAGAAAGG AATCTGCTAC TAAATCAAAG GCTCAGTCGT ACCAGACACA GTTAATTGCA AGATCGCCTG TTGTAGATAA AAGTGTAGTG TTGCCTCGTT TTCCTCAACC TCAAACATCC CAAAGGGCTT TACCATCAAG AGTAGCTGCA ATGTTAAACG TGTTGATACC CACTATATTT GACAAACAAG GAGCACAACT GCTTGCTGTT GCCTGCCTTG TCGTCTCAAG AACACTGATC TCTGACCGAA TAGCCTCTTT GAATGGGACC ACTGTGAAGT ATGTCTTGGA GCAGGATAAG GCAGCCTTTG TTCGTTTGAT TGGTTTGAGT GTCCTCCAAA GTGGTGCATC TTCTATAATT GCTCCTTCAT TAAGGCATTT AACGCAAAGG CTAGCGTTAG GGTGGAGGAT TCGTTTGACT CAACATCTGC TACGGAATTA TTTGAGAAAT AATGCGTTTT ACAAGGTTTT CCACATGTCA GGCAATAGTA TTGATGCGGA TCAGAGACTC ACTCGTGACC TGGAAAAGTT AACCTCTGAC TTGTCTGGAC TTCTTACTGG AATGGTAAAG CCATCGGTCG ACATTCTCTG GTTCACCTGG AGGATGAAGT TATTGACTGG TCAGAGGGGA GTTGCCATAC TTTACACATA TATGTTACTT GGTCTGGGTT TTCTGAGACG TGTTGCTCCC GATTTCGGTG ATCTAGCCGG TGAAGAACAG CTGCTTGAGG GGAAGTTTAG GTTTATGCAC GAGAGGCTGA ACACTCATGC TGAATCTATT GCATTCTTTG GAGGTGGAGC ACGAGAAAAG GCTATGGTTG ACGCAAAATT CAGGGCCCTA CTGGACCACT CTCTCATGCT CTTGAGGAAG AAATGGTTGT ATGGCATACT TGATGATTTT GTGACAAAGC AACTCCCCAA TAATGTGACG TGGGGATTGA GTTTATTGTA TGCCCTAGAA CACAAGGGAG ACAGAGCACT TGTCTCCACT CAAGGCGAGT TGGCACATGC GTTGCGGTAT CTAGCTTCTG TTGTCTCCCA AAGCTTTATG GCTTTTGGCG ATATTCTTGA ACTACACAAG AAGTTCCTTG AGCTCTCTGG TGGTATTAAC AGAATTTTTG AGCTCGATGA GTTTTTGGAT GCCTCTCAGT CAGGTGTTAC CTCAGAAAAT CACACAAGTC GTTTGGATTC TCAAGATCTA CTTTCCTTTT CGGAGGTGGA TATCATTACC CCTGCTCAGA AACTGATGGC TAGCAAGTTG TCATGCGAAA TAGTTTCAGG GAAAAGTCTG CTCGTCACAG GTCCAAATGG TAGTGGAAAG ACTTCAGTAT TTAGAGTCCT TAGAGATATC TGGCCCACTG TATGTGGAAG ACTTACCAAA CCATCGTTGG ATATCAAAGA ACTTGGGTCA GGGAATGGCA TGTTTTTTGT CCCGCAGCGA CCTTATACAT GTTTAGGGAC ACTGAGAGAT CAAATTATAT ACCCTCTATC TAAAGAAGAA GCAAAGAAAA GGGCAGCAAA GTTGTACACC AATGGAGAGA GCGCAACAGA AGCTGGAAGC ATTCTGGATG CTCATTTGAA AACCATTCTG GAGAATGTTC GATTAGTTTA TCTCTTGGAA AGAGATGTAG GTGGTTGGGA TGCTACTACC AATTGGGAAG ACATATTATC TCTTGGAGAG CAACAGAGAC TAGGCATGGC ACGTTTATTC TTTCACAGAC CGAAGTTTGG AGTCCTTGAT GAATGCACAA ATGCGACGAG TGTTGATGTT GAGGAACAGC TCTATAGGGT TGCACGAGAC ATGGGCGTCA CTTTCATAAC CTCATCACAA CGGCCGGCTC TGATCCCATT CCATTCCTTG GAGCTAAGGC TGATTGATGG AGAAGGAAAC TGGGAGCTCC GTTCGATCGA ACAGACAACA GAGTAAACTC AGCAAAACAT TTAAGAAAGG TCTCTATATA GTTCTTAAAG AAAAAAGTAA TAAAGTTAAA AGCCATTAGA CGATGCAAGC TATATGGTAT GTAGTTTATC GATTCTTCCT CCTCGATCGC AAGGAGTGGA AGAGAATGCG TCGATGCTAC TGCTTTTGTT AGATTTGGAG GATTGATTTG ATTCTAGATA TATATAAATG TAGGTGATTG AATTGGTGGA GCATTTTGAG TTCTCCTATG GAGTATGTTC TTAGCTTTGA AGAAACAAAG AATATAGTGA TCACTCAAAT AATGTACAGT TCGTTTCTGT TTCCTCTGTT GGGATTACTT TACCTTTTA |
| Length | 4689 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_7: 745330.. 754042 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT4G39850.3 |
| Description | peroxisomal ABC transporter 1 |
| TAIR curator summary | Encodes a peroxisomal protein of the ATP binding cassette (ABC) transporter class (PMP subfamily) with significant identity to the human X-linked adrenoleukodystrophy protein (ALDP). The gene product promotes germination and represses embryo dormancy. ABI3, ABA1, FUS3 and LEC1 are epistatic to this gene. Mutants accumulate fatty acyl CoA suggesting a defect in uptake of fatty acyl CoA into the peroxisome. |
| Alias | [ABCD1][ACN2][AtABCD1][CTS][PED3][PXA1][ATP-binding cassette D1][acetate non-utilizing 2][Arabidopsis thaliana ATP-binding cassette D1][COMATOSE][PEROXISOME DEFECTIVE 3][peroxisomal ABC transporter 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 4.12311 |
Ahg478716 | proteasome activating protein 200 |
| 6 |
Ahg491819 | protein kinase family protein / WD-40 repeat family protein |
| 7.07107 |
Ahg943470 | cullin 1 |
| 8 |
Ahg919087 | multidrug resistance-associated protein 5 |
| 8.12404 |
Ahg492373 | ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein |
| 8.48528 |
Ahg478309 | cell division cycle 48 |
| 9.48683 |
Ahg488386 | U-box domain-containing protein |
| 10.198 |
Ahg495719 | peroxin 5 |
| 11.7473 |
Ahg493647 | yeast YAK1-related gene 1 |
| 11.8322 |
Ahg495156 | CLPC homologue 1 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|