Detail



ID : Ahg493689

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|493689|fgenesh2_kg.7__3122__AT5G37260.1
Sequence
ATAAACAACA ACTCTCTTAC CAATCTCAAA CATTTCTCTC TCTTTATTCT TCTTCTTCAA CATCAGATTT CAGATCTTAA ATCTTCAAGT CTTCTTCTTC TTCTGCGACC ATGGCTATGC AGGAACGTTG TGAGAGTTTA TGTGATGAGC TTATATCTTC CACAGATGCC TTTTACCTCA AGACAAGAAA GCCTTATACC ATTACTAAAC AAAGAGAGAA ATGGACAGAA GCAGAGCATG AGAAGTTTGT AGAAGCTTTG AAACTCTATG GCAGAGCTTG GAGACGAATC GAAGAACATG TTGGAACAAA GACCGCGGTT CAGATTCGAA GTCATGCTCA GAAGTTTTTC ACTAAGGTTG CTCGCGATTT TGGTGTTAGC TCTGAGTCCA TTGAGATTCC GCCTCCACGG CCGAAAAGAA AGCCGATGCA TCCTTACCCT AGGAAGCTTG TGATTCCGGA TGCAAAAGAG ATGGCATATG TTGAACTAAC CGGCTCCAAG ATGGTTCAGG ATGAAGATAA CCGATCTCCA ACATCGGTTT TATCTGCTCA TGGCTCAGAT GGATTAGGTT CCATTGGTTC AAATTCACCT AACTCTTCTT CAGCTGAGTT ATCATCTCAC ACAGAGGAAT CACTGTCTCC AGAAGCAGAG ACCAAACAAA GCCTTAAACT CTTTGGAAAG ACTTTTGTAG TTGGTGATTA CAACTCTTCA ACAAGCTCTG ATGATTCTGA AGATCTCAAG AAGAAGCTAG ACTCAGAAAC ACAGTCTGTT CAATGTTCTT CTTGTACTTC GGAAAACGCT GAAACAGAAG TGACACGATT GGAAGTATCG GAGTTTAAAA GAAGCGAGAG ATCAGCTTTC TCTCAGTTGA AATCGACGGT GACTGAGATG AACAACATGA GAGGGTTCAT GCCTTACAAA AAGAGAGTAA AGGTGGAAGA AAACATTGAC AATGTAAAAA TGTCATATCC TTTGTGGTG 
Length979
Protein Sequence
Protein Residue
Map Locationscaffold_7: 18744989.. 18746780
Download Sequence
A.thaliana
AGI-codeAT5G37260.1
DescriptionHomeodomain-like superfamily protein
TAIR curator summaryEncodes a MYB family transcription factor Circadian 1 (CIR1). Involved in circadian regulation in Arabidopsis.
Alias[CIR1][RVE2][CIRCADIAN 1][REVEILLE 2]
Gene coexpression
MR
MR Locus Description
1.73205 Ahg941688
2.23607 Ahg917356 oxidative stress 3
2.44949 Ahg947850 cycling DOF factor 2
3.4641 Ahg479607 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
5.47723 Ahg355122 oligopeptide transporter
7.34847 Ahg488429 B-box type zinc finger protein with CCT domain
8.12404 Ahg484500 chloride channel B
8.66025 Ahg493809
8.94427 Ahg480112
9.38083 Ahg910021 Protein phosphatase 2C family protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression