| Annotation |
|---|
| Description | jgi|Araly1|495615|fgenesh2_kg.8__1431__AT5G55300.1 |
| Sequence |
AGAAGTTGGT CTGAGCCTTT ATCATCGTTG TTCTTTCGGG TATGGGCACT GAAACTGTTT CGAAACCTGT GATGGATAAT GGGTGTGAAG ACAGTGATGA TGACAAGCCT GTAGTGTTCA AGAGGAGAAG TACTGTTGCT TCTAATTCGA ATCAATCTAA ATCCAATCCC CAGAGAAGCA AGGCAGTCCC TACCACAAAG GAATCACCTA TGAGATCCCC TGTGACTAGC CCAAATGGAA CCACTCCTTC GAATAGAACT TCTACAGTGA AATCCTCTGT GCCATCATCT TCTGCTAAGG CTTCACCAGC AAAGTCACCA TTGCGGAATG ATACGCTCTC TACCGTTAAG GATAGGAGCC AGTTACATAA AGATCAGTCT AAATGTAAAA TTGAACATGA GGATTCTGAG GATGATAGAC CATTAAGTTC CATACTATCT GGAAATTCCA ATCGGCAAAA TAAAGGGCCA ACCTCTTCGC GGCAGGTGTC TTCACCGCAG CCAGAAAAAA AGAATAATGG TGATCGACCT CTTGATAGAG CAAACCGAAT CATAAAAGAT GAGTCAGATG ATGAAACTCC AATCTCGTTA ATGTTTCGGA AAAAGATTGA TAGTGGGATG TCAGGGGGCA AACAGATCTC CAATGATGAA AATAAACCTT TGGCTAAAAA GTTGCATCAG AATGGTTCCG CACTTAAAAA TGAAGTACCG AACTGTAAGG TATTAGGTAA GAGACCCGTG GAGAAGAATA GTTCTGCAGA TCAATCTTCC TTGAAGAAGG TCAAGCTATC AGCTTCACCT ACTTCAGTGA AAATGAAACA AGATTCTGTC AAAAAAGAGT CAGATGATAA GGGAAGGGTT TTGGGTTCCC CAAAACCATT GAAAGCTAAA AAGTTATCTA CCAGAGAAGA TGGAACTGAT GATGATGATG ATGTTCCGAT ATCCAAGAGA TTCAAATCAG ATTCCTCCAA CAGTAAAACA TCATCTGCAA AACCTAAGGC AGTAAAACAA AACTCTACTT CATCAGCTGC AAAGCCAAAA GTGACAAATG TCGTTTCTCC TCGGTCCAGA ACAACGAACA AAAACTCTAA GAAAGTAACA AAGGACTCAA AATATTCCGC GTCTTCGAAA TCGTCACCTT CATCTGGAGA TGGGCAGAAG AAATGGACTA CCTTGGTGCA CAACGGTGTA ATATTTCCAC CACCTTACAA GCCTCACGGC ATTAAGATTT TGTACAAGGG GAAGCCTGTT GACCTAACTA CTGAACAAGA AGAGGTTGCG ACTATGTTTG CAGTAATGAG AGAGACGGAT TATTATAATA AACCTCAATT TAGGGAGAAT TTCTGGAATG ACTGGCGAGC ACTGCTTGGC AGGAAACATG TGATACAGAA GTTGGATGAT TGTGACTTTA CTCCCATATA TGAGTGGCAT TTGGAAGAGA AAGAGAAGAA GAAACAAATG AGCACAGAGG AGAAAAAAGC TTTGAAAGAG GAGAAACTGA AGCAAGAGGA GAAATATATG TGGGCTGTTG TTGATGGTGT CAAAGAGAAG ATTGGTAATT TCAGAGTTGA ACCGCCTGGG CTTTTCAGAG GCCGTGGAGA ACATCCCAAG ATGGGAAAAC TAAAGAAGCG TATCCGTCCA TGCGAGATCA CCTTAAATAT CGGGAAAGGT GCTCCTATTC CAGAATGTCC AATCGCTGGT GAAAGATGGA AAGAAGTAAA GCATGATAAC ACAGTTACCT GGCTAGCTTT CTGGGTTGAT CCTATTAACC AGAAAGAATT CAAGTATGTA TTTTTGGCAC CTAGCAGTGC TATGAAAGGG CTGAGCGACA AAGAGAAGTA CGAGAAAGCT AGGAATCTTA CGGACCATAT AGATAATATA AGGACAACAT ACACCAAGAA TTTTACCGCC AAGGATGTTA CAACGAAGCA AATTGCTGTG GCGACATATC TCATTGATAA ATTGGCGCTT AGGGCTGGAA ATGAGAAGGA TGATGATGAG GCCGACACTG TTGGTTGTTG TACTTTAAAA GTTGGAAATG TGGAGTGTAT TCCTCCAAAT AAAATAAAGT TTGACTTTCT TGGTAAGGAT TCAATCCAGT ATGTGAACAC AGTTGAGGTT GAGCCTCTTG TTTACAAGGC CATTGGACAG TTCCAGGCGG GAAAATCCAA AACAGATGAT CTTTTTGATG AGTTGGACAC AAGTAAACTG AATGCTCATC TGAAGGAACT TGTGCCTGGT CTCACAGCCA AAGTATTCCG TACATATAAT GCTTCCATCA CTTTGGATGA AATGCTGAGT CAAGAAACCA AAGATGGCGA TTTAAATCAG AAAATAGTAG TTTATCAGAA AGCAAACAAG GAGGTTGCCA TAATCTGTAA TCATCAGCGT ACTGTATCAA AGTCACATGG TGCGCAAATT GAAAAATTGA CTGCGAGAAT AGAAGAACTC AAGGAGGGTC TTAAAGAGCT CAAAACTAAT CTTGACCGGG CTAAAAAGGG AAAACCACCA TTGGAAGGTT CTGATGGAAA GAAGATTAGA AGCTTAGAAC CAAACGCGTG GGAGAAGAAG ATTGCTCAAC AGAGTGCTAA GATCGAGAAA ATGGAACGAG ACATGCATAC AAAAGAGGAC TTGAAAACCG TGGCACTAGG CACATCTAAG ATCAATTACC TGGATCCTAG AATCACGGTT GCATGGTGCA AACGTCATGA AGTACCAATC GAAAAGATAT TCACCAAGTC TCTTTTGGAG AAATTTGCGT GGGCAATGGA TGTAGAACCC GATTACAGAT TCTCGCACCG GATGGTATAG AGAAGCAGTT CTCGGATGGA GCAATTATTG GAGGGCAAAA GAGCTGAATG AGATAAGAGC AAAGAGAAAA CCGGCCTTTC TTCTATTCAT CTTCCTCCTT TGTTTAGAAC CTTTTACCGT AGTGAGTAAA AAAAAATTCA AGCTGTTTCA TTAGTGTTAT TTTTTAACAT TATTACTATG ACTAAAATGC TATGTTATTT TTCACATGAT TAAAGAAATA GAAAAT |
| Length | 3036 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_8: 15955674.. 15960193 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G55300.2 |
| Description | DNA topoisomerase I alpha |
| TAIR curator summary | Encodes a type-I DNA topoisomerase I. Disruptions in this gene affect phyllotaxis and plant architecture suggesting that the gene plays a critical role in the maintenance of a regular pattern of organ initiation. Isolated as a protein oxidized during seed germination; proteomics approach revealed differences in de novo synthesis levels of this protein in condition with vs. without salicylic acid in the period from 0 to 40 hrs. following seed imbibition. Functions in stem cell maintenance at all stages of shoot and floral meristems and in the regulation of gene silencing. |
| Alias | [MGO1][TOP1][TOP1ALPHA][MGOUN 1][TOPOISOMERASE 1][DNA topoisomerase I alpha] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1.41421 |
Ahg496862 | casein kinase alpha 1 |
| 4.69042 |
Ahg473467 | RING/FYVE/PHD zinc finger superfamily protein |
| 6.7082 |
Ahg323092 | aldehyde oxidase 2 |
| 7.74597 |
Ahg480691 | Phosphatidylinositol 3- and 4-kinase family protein with FAT domain |
| 8.3666 |
Ahg471128 | endoplasmic reticulum-type calcium-transporting ATPase 3 |
| 12.6491 |
Ahg329195 | modifier of snc1 |
| 12.9615 |
Ahg938524 | GATA type zinc finger transcription factor family protein |
| 14.4222 |
Ahg940592 | DEAD/DEAH box RNA helicase family protein |
| 18.5742 |
Ahg471773 | Transducin family protein / WD-40 repeat family protein |
| 19.7737 |
Ahg487210 | kow domain-containing transcription factor 1 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
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