| Annotation |
|---|
| Description | jgi|Araly1|495812|fgenesh2_kg.8__1628__AT5G57160.1 |
| Sequence |
ATGACGGAAG AGATCAAATT CAGCGTTCTG GTATCTCTCT TCAACTGGAT TCAAAAAAGC AAAACCTCAT CTCAAAAACG CTCCAAATTC CGCAAGTTTC TCGACACTTA CTGCAAACCC TCCGACTACT TCGTCGCCGT CCGTTTAATC ATTCCGTCGC TTGATCGAGA ACGAGGTAGC TACGGCCTCA AAGAGTCAGT GCTCGCCACG TGTCTGATCG ACGCACTTGG CATCTCTCGT GACGCTCCTG ACGCTGTACG TCTTCTCAAT TGGCGTAAAG GAGGAACCGC TAAAGCTGGA GCCAATGCTG GAAACTTTTC CTTGATTGCT GCTGAGGTAT TGCAACGTAG ACAAGGAATG GCTTCTGGTG GTTTGACTGT TAAGGAATTG AATGATTTGC TTGATCGTTT GGCTTCAAGT GAGAACAGGT GCAGAGCCGA AAAAACTTTG GTTCTTTCTA CTTTGATTCA GAAGACAAAT GCTCAGGAGA TGAAGTGGGT CATTAGGATT ATTCTTAAAG ATTTGAAACT GGGAATGAGT GAGAAGAGCA TTTTTCAGGA GTTCCATCCA GATGCTGAGG ACTTGTTTAA TGTTACCTGT GACTTGAAAC TAGTCTGTGA AAAGTTGAGG GATCGACACC AACGGCACAA GCGCCAGGAT ATAGAGGTTG GGAAAGCCGT ACGACCCCAA TTAGCTATGC GTATCAGTGA TGTAAATGCT TCTTGGAAGA AACTGCATGG GAAAGATGTA GTTGCTGAAT GCAAATTTGA TGGGGATCGC ATACAAATAC ACAAAAATGG GACTGACATA CATTACTTCT CTAGGAACTT CCTTGACCAT TCTGAATACG CACATGCCAT GTCGGATCTT ATTGTACAAA ATATATTAGT GGACAAGTGT ATCCTCGATG GTGAAATGTT GGTCTGGGAT ACATCCCTGA ATCGGTTTGC TGAGTTTGGT TCGAATCAGG AAATAGCCAA GGCAGCAAGG GAGGGTCTTG ACAGCCATAA ACAGTTGTGT TATGTTGCCT TTGATGTTCT TTATGTTGGC GATACTAGCG TCATCCACCA GAGTTTGAAG GAACGGCATG AACTGCTGAG GAAAGTGGTC AAACCTTTAA AAGGTCGGCT CGAAGCTTTA GTACCTGAAG GTGGTCTCAA TGTTCACCGC CCTTCAGGGG AACCTAGTTG GTCTATTGTT GTTCATGCTG CTGCTGATGT TGAGCGATTT TTCAAAGAAA CAGTTGAAAA CAGAGATGAA GGAGTTGTGC TTAAAGACCT GGGATCGAAA TGGGAACCTG GAGATCGTAG TGGCAAGTGG TTGAAATTGA AGCCTGAATA TATCCGGGCT GGTGCTGACC TGGATGTTCT TATAATAGGA GGATACTATG GCTCCGGACG TCGTGGAGGA GAGGTAGCAC AGTTTCTTGT CGCCTTGGCT GACCGGGCAG AGGCAAATGT ATATCCCAGG CGATTTATGT CCTTTTGTAG AGTTGGCACT GGACTTTCTG ATGATGAGCT CAACACTGTT GTAAGCAAAC TGAAGCCTTA TTTCAGAAAA AATGAACACC CAAAGAAGGC TCCACCAAGC TTCTATCAGG TCACTAATCA CTCAAAAGAG AGACCGGATG TTTGGATTGA AAGCCCGGAA AAATCAATAA TACTTTCAAT CACTAGTGAT ATCAGGACAA TAAGGTCTGA GGTGTTTGTT GCACCTTACA GCCTGAGGTT TCCTCGTATT GATAAAGTAA GATATGACAA GTCTTGGCAT GAATGTCTCG ATGTGCAGGC TTTTGTGGAA TTGGTAAATT CGAGTAACGG CACCACACAG AAACAGAAGG AATCTGAAAG CACACAGGAC AATCCAAAAG TCAATAAATC TTCCAAGAAA GGAGAGAAAA AGAATGTCTC TCTTGTCCCC TCTCAGTTTA TTCAAACTGA TGTATCGGAT ATCAAGGGCA AGACCTCAGT CTTCTCAAAT ATGATATTTT ATTTTGTTAA CGTGCCTCTG TCCCATTCTC TTGAGACTTT CCACAAAATG GTGGTTGAGA ATGGAGGGAA GTTTTCAATG AACTTAAACA ACTCAGTGAC TCATTGCATT GCAGCAGAAA GCAGTGGAAT AAAATATCAG GCAGCAAAGC GTCAGAGAGA TGTCATCCAC TTTTCATGGG TCTTAGATTG CTGTTCGCGA AATAAGATGC TTCCTTTGCA GCCAAAGTAT TTCCTCCACC TCACTGATGC TTCAAGGACA AAATTACAGG ATGACATTGA TGAATTTTCT GATTCTTATT ACTGGGATTT AGACCTTGAA GGTCTCAAAC AGGTCTTAAG CAATGCCAAG CAATCTGAAG ATTCAAAATC CATTGACTAC TACAAGAAAA AGTTATGTCC AGAGAAAAGA TGGTCCTGCC TCTTTAGCTG CTGTGTTTAC TTCTACCCGT ATAGTCAAAC ATTGAGCACT GAAGAGGAAG CCCTGTTGGG AATTATGGCT AAGAGATTAG CGCTTGAAGT GTTAATGGGT GGTGGTAAAG TTAGCAATAA TCTTGCTCAT GCGTCGCACC TTGTAGTCCT TGCTGTGGCA GAAAAATCTT TGGATTTTGC TTCAGTTTCG AAAAGTTTCA GTGAGATGGA GAAACGTCTT TTGCTGAAGA AAAGGCTTCA TGTTGTTAGC TCGCACTGGT TAGAGGACAG CTTGCGAAGA GAGGAAAAAC TGTGCGAGGA TGTCTACAAT CTGAGGCCTA AGTATATGGA AGAGTCTGAT ACTGAAGAAT CAGATAAATC CGAACATGAT ACAACGGAAG TAGCTTCCGA AGGTAGTGCT CAAACCGAAG AGCCAGCTTC CTCAAAAATG GCAATTACGA GTTCAAGAGG ACGGTCAAAT ACTAGAGCTG TTAAAAGGGG AAGGTCTTCT ACAAACTCAC TGCGACGAGT ACAGAGACGG AGAGGCAAGC AGCCTTCTAA GATAACCGGA GATGAAACAG AGGAGAGTGA TGCTTCTGAA GAAAAGGTTT CAACAAGACT CAGTGATATA GCAGAAGAGA CTGATTCGTT TGGTGAGGCT CAAAGAAACT CTAGCAGAGG AAGATCTGCG AAGAGAGGAA AGTCTCGTGT GGGACAAACC CAAAGAGTAC AGAGATCACG AAGAGGCAAG AAGCCTTCAA AGATAGGAGG AGATGAGTCT GAGGAAAATG ATGAATTTGG TGACAAAAAC AATGTGTCAT CAGATGCGGA AGAGAGTAAT GCAGCTGGTA GATCTGTGGA AAACGAAGAA ACCCGAGAAC CTGACATAGC GAAGTACACA GAATCACTGC AAAGAGACAC CACAGCAGCA GTTGAAGACG CCTCACAAGA TTCTAGAAAT GCAAAGACCG AGATGGATAT GAAAGAGAAG TTACAAATCC ATGAGGATCC ACTACAAGCT ATGCTAATGA ACATGTTCCC GAGTCTCAGT CAAAAAAACA CAGAGACATC AAACCGAATC ACCGGGGAAA ATAGAAAGGC TAATGTTTCT GGTGAATGCG AGTCTTCAGA GAAAAGAAAA CTCGACACCG AGACTGATAA TACTTGTGTG AACACAGGCA CAGACTCAGA AGCAGTTCCT CCTCTTGCGA AGAAAAAGAA AGTCAGCTAC CGGGATGTTG CCGGAGAACT GCTCAAAGAC TGGTGATACA AGCTCTTATG TTATGTACAT GTTGCTCAAC TCTTAAATCC TCTTTATCTC TTTTGTTGGT GGCCATAATT TATTTGGAGG GCTTGTCATA AAACGCGAAC GTTTATTATA GACATTAGAT AAATGTGAAA GAAGTCTTCG TGATGGAC |
| Length | 3818 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_8: 16884721.. 16891646 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G57160.1 |
| Description | DNA ligase IV |
| TAIR curator summary | Encodes the Arabidopsis orthologue of the yeast and mammalian DNA ligase IV. Involved in the repair of DNA damage but, unlike in yeast, not required for T-DNA integration. Interacts with the Arabidopsis homologue of XRCC4. |
| Alias | [ATLIG4][LIG4][DNA LIGASE IV] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1 |
Ahg926406 | Protein of unknown function, DUF593 |
| 3 |
Ahg927706 | Flavodoxin family protein |
| 6.63325 |
Ahg479152 | response regulator 1 |
| 7.07107 |
Ahg337635 | Nuclear pore complex protein |
| 7.34847 |
Ahg926384 | anthranilate phosphoribosyltransferase, putative |
| 11.3137 |
Ahg478079 | peroxin 13 |
| 13.4164 |
Ahg922941 | AAA-type ATPase family protein |
| 14.4914 |
Ahg479495 | |
| 15.9687 |
Ahg943541 | SET domain-containing protein |
| 18.735 |
Ahg491382 | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|