Detail



ID : Ahg495912

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|495912|fgenesh2_kg.8__1728__AT5G58060.1
Sequence
GCGTCTGGTT CGACACCTCA AAACTTAATT TGCCTTAAGC ATCTCCGACT TAGTTTCCAG GTCCAACGCC TCTTCTCCTC TCCTCCTCGC TTCCTTCTCA CGCAACCTTC GATCCACCGC AGCTATGAAG ATCACCGCCT TGCTGGTTCT CAAGTGCGCT CCCGAAGCTT CTGATCCCGT CATCCTCGCC AACGCTTCCG ACGTCTCTCA CTTCGGTTAT TTCCAGCGAT CTAGCGTCAA GGAGTTCGTC GTCTTTGTCG GTCGCACTGT CGCCAGCCGA ACCCCTCCTT CCCAGCGCCA GTCTGTCCAA CACGAAGAGT ACAAGGTTCA CGCTTACAAT AGAAATGGCC TTTGCGCGGT GGGGTTCATG GATGATCATT ATCCTGTTCG AAGTGCTTTT TCTCTTCTCA ATCAGGTCCT AGATGAGTAC CAGAAGAGTT TTGGTGAGGC ATGGAGGTCT GCAAAAGAAG ACTCCAGTCA GCCTTGGCCA TACTTAACAG AAGCTTTAAA CAAATTTCAG GACCCAGCAG AGGCTGATAA GCTGTTGAAA ATTCAGAGGG AGTTGGATGA GACCAAGATT ATCCTTCATA AAACCATTGA TAGTGTTCTA GCCCGTGGTG AGAAGCTGGA CAGCTTAGTG GAGAAGAGCT CAGATTTGAG CATGGCATCA CAGATGTTTT ACAAGCAAGC GAAGAAAACA AATTCATGCT GTACTATTCT GTGAGCTGGA AGAGTCCTGG GTATATAGTC AACCAAACTT TTGCTGGGGG GAGACTGTTT TTCTATACAT ATAATTCCGT CTGTAGTTTG CATGCATTAT TTGATATTCC ATAAGACTCG CGTCGTGTGG TGTGTTTATC CAAATACATA ATGTCACTTC TGCAAGATTT CAATTGTGTT TGCCAGATTA TCTGATTGAA TTTGTGCGCG CTTCCTTATG A 
Length941
Protein Sequence
Protein Residue
Map Locationscaffold_8: 17300882.. 17303106
Download Sequence
A.thaliana
AGI-codeAT5G58060.2
DescriptionSNARE-like superfamily protein
TAIR curator summarymember of YKT6 Gene Family
Alias[ATGP1][ATYKT61][YKT61]
Gene coexpression
MR
MR Locus Description
1.73205 Ahg924165 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein
8.83176 Ahg495534 Uncharacterised conserved protein (UCP012943)
11.8322 Ahg316186 Sec14p-like phosphatidylinositol transfer family protein
21.6333 Ahg488148 ARF GTPase-activating protein
22.8035 Ahg937358 plant U-box 13
23.0651 Ahg943174 Protein of unknown function DUF106, transmembrane
27.4591 Ahg946622 basic helix-loop-helix (bHLH) DNA-binding superfamily protein
28.7228 Ahg479509 RING/U-box superfamily protein
29.189 Ahg939906 clathrin adaptor complexes medium subunit family protein
31.1769 Ahg949632 ARM repeat superfamily protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression