Detail



ID : Ahg924364

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|924364|scaffold_105645.1
Sequence
CCAAAAAAAA AAACACAGAG ATGGGTTTGG TTACAGATGA AGTGAGGGCT AGGGCAGAGA AATACACAGG AGATGAGATA TGCCGTGAGA AGACAAAGGA GTTTCTCAAG GAAGTTTCTA TGCCTAATGG TTTATTGCCA TTGAAGGACA TTGAAGAGGT TGGTTACGAC AGAGAGACAG GTATTGTCTG GCTGAAGCAG AAGAAGAGCA TCACCCACAA GTTTCTAGAA ATTGGGAAAC TTGTCTCTTA CGCCACCGAG GTCACTGCCC AGGTGGAGGT CGGAAAGATC AAGAAGCTCA CCGGTGTTAA GGCTAAGGAG CTTCTTATTT GGGTCACTCT CAATGAGCTT ACCTTGGAGC AGCCAATAAG TTCAGGGAAG ATCAATTTCA GGACACCAAC AGGTTTGTCC AGGACTTTCC CAGTGTCGGC TTTTGTTGTT CCTGAGGTTG AGAAGCCTGC AATGGAGAAG AACAATGGAA CCACTGAGGT CAAAGAAGCT GTTGCAGTTA CAGATGCTTA GTCTCTTTAA TCTATCTCTA AT 
Length542
Protein Sequence
Protein Residue
Map Locationscaffold_1: 30895328.. 30895858
Download Sequence
A.thaliana
AGI-codeAT1G56580.1
DescriptionProtein of unknown function, DUF538
TAIR curator summaryEncodes SMALLER WITH VARIABLE BRANCHES (SVB), a protein with a conserved domain of unknown function (DUF538). The trichomes of the SVB mutants are smaller and exhibit branches of variable length and number.
Alias[SVB][SMALLER WITH VARIABLE BRANCHES]
Gene coexpression
MR
MR Locus Description
4 Ahg311286 NAD(P)-binding Rossmann-fold superfamily protein
14.1774 Ahg496603 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
32.7414 Ahg479286 conserved peptide upstream open reading frame 30
44.5421 Ahg941476 alpha/beta-Hydrolases superfamily protein
46.3141 Ahg477906 peroxiredoxin IIF
48.0312 Ahg952212 ribosomal protein L23AA
50.4975 Ahg949426 myb domain protein 111
53.4041 Ahg482629 demeter-like 1
56.9298 Ahg477458 reversibly glycosylated polypeptide 1
60.3324 Ahg923403 poly(A) binding protein 8
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression