| Annotation |
|---|
| Description | jgi|Araly1|933875|scaffold_401863.1 |
| Sequence |
AAAACACAAT CGAAGAGAAA ATGGAGGAGA TTTCGACGGA TCCGCTTGTT CCAGCGGTGA AACCTGACCC GAGGACATCT TCAGTTGGTG AAGGTGCTAA TCGTAATGAA AATGATGACG GTGGAGACGG TGGTTCTGAG ATTGGAGCAC CGGATCTGGA TAAAGACTTG CTTTGTCCGA TTTGTATGCA GATTATTAAA GATGCTTTCC TCACGGCTTG TGGTCATAGT TTCTGCTATA TGTGTATCAT CACACACCTT AGGAACAAGA GTGATTGTCC CTGTTGTAGC CAACACCTCA CCAACAATCA GCTTTATCCT AATTTCTTGC TCGATAAGCT ATTGAAGAAA ACTTCAGCTC GGCATGTGTC AAAAACTGCA TCGCCCTTGG ATCAATTTCG GGAAGCACTT CAAAGGGGTT GTGATGTGTC AATTAAGGAG GTTGATAATC TTCTTTCACT TCTTGCGGAA AGGAAGAGAA AAATGGAACA GGAAGAAGCT GAGAGGAACA TGCAGATTCT GTTGGACTTT TTGCATTGTC TAAGGAAGCA AAAAGTTGAT GAACTAAATG AGGTGCAAAC TGATCTCCAG TATATCAAAG AGGATATAAA TGCTGTTGAG AGACATAGAA TAGATTTATA CCGGGCTAGG GACAGATATT CTGTGAAGTT GCGGATGCTC GGAGATGATC CAAGCACAAG AAATGCATGG CCACATGAGA AGAACCAGAG TGGTTTCAAC TCCAATTCTC TGAGCATAAG AGGAGGAAAT TTTTTAGGCA ATTATCAAAA CAAAAAGGTA GAGGGGAAGG CACAAGGAAG CTCTCATGGG CTACCAAAGA AGGATGCGCT GAGTGGGTCA GATTCGCAAA GTTTGAATCA ATCAACTGTC TCAATGGCTA GAAAGAAACG GATCCATGCT CAGTTCAATG ATCTACAAGA ATGTTACCTC CAAAAGCGGC GTCAGTTGGT AGACCAACCA AATAGTAAAC AAGAAAATGA TAAGAGTGTA GTACGGAGGG AAGGCTATAG CAACGGCCTT GCAGATTTTC AATCTGTGTT GACTACCTTC ACTCGCTACA GTCGTCTAAG AGTTATAGCA GAAATCCGGC ATGGGGACAT ATTTCATTCA GCCAACATTG TATCAAGCAT AGAGTTTGAT CGTGATGATG AGCTGTTTGC CACTGCTGGT GTTTCTAGAT GTATAAAGGT TTTTGACTTC TCTTCGGTTG TAAATGAACC AGCAGATATG CAGTGTCCGA TTGTGGAGAT GTCAACTCGG TCTAAACTTA GTTGCTTGAG TTGGAATAAG CATGAGAAAA ATCACATAGC AAGCAGTGAT TATGAAGGAA TAGTAACAGT GTGGGATGTA ACTACTAGGC AGAGTCTTAT GGAGTATGAA GAGCACGAAA AACGTGCCTG GAGTGTTGAC TTTTCACGAA CAGAACCATC AATGCTTGTA TCTGGTAGTG ACGATTGCAA GGTTAAAGTT TGGTGCACAA GGCAGGAAGC AAGTGTGCTT AATATTGATA TGAAAGCAAA CATATGTTGT GTCAAGTACA ATCCTGGCTC AAGCAACTAC ATTGCGGTCG GATCAGCTGA TCATCACATC CATTATTACG ATCTAAGAAA TATAAGCCAA CCACTTCATG TCTTCAGTGG ACACAAGAAA GCAGTTTCCT ATGTTAAATT TTTGTCCAAC AACGAGCTCG CTTCTGCGTC CACAGATAGC ACACTACGCT TATGGGATGT CAAAGACAAC TTGCCAGTTC GAACATTCAG AGGACACACT AACGAGAAGA ACTTTGTGGG TCTCACAGTG AATAGCGAGT ATCTCGCCTG TGGAAGCGAG ACAAACGAAG TATATGTATA TCACAAGGAA ATCACGAGAC CCGTGACATC GCACAGATTT GGATCACCTG ACATGGACGA TGCAGAGGAA GAGGCAGGCT CATACTTTAT TAGTGCGGTT TGCTGGAAGA GCGATAGTCC CACAATGTTG ACTGCGAATA GTCAAGGAAC CATCAAAGTT CTGGTACTTG CTGCGTGATT CTATAAACGT TACAAAAG |
| Length | 2068 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_4: 14823315.. 14828698 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT2G32950.1 |
| Description | Transducin/WD40 repeat-like superfamily protein |
| TAIR curator summary | Represses photomorphogenesis and induces skotomorphogenesis in the dark. Contains a ring finger zinc-binding motif, a coiled-coil domain, and several WD-40 repeats, similar to G-beta proteins. The C-terminus has homology to TAFII80, a subunit of the TFIID component of the RNA polymerase II of Drosophila. Nuclear localization in the dark and cytoplasmic in the light. |
| Alias | [ATCOP1][COP1][DET340][EMB168][FUS1][ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1][CONSTITUTIVE PHOTOMORPHOGENIC 1][DEETIOLATED MUTANT 340][EMBRYO DEFECTIVE 168][FUSCA 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 7.34847 |
Ahg488687 | UTP:galactose-1-phosphate uridylyltransferases;ribose-5-phosphate adenylyltransferases |
| 11.7473 |
Ahg479910 | Protein kinase superfamily protein |
| 18.4391 |
Ahg480415 | Putative endonuclease or glycosyl hydrolase |
| 21.5407 |
Ahg475736 | senescence-associated family protein |
| 23.2379 |
Ahg475755 | Cytochrome P450 superfamily protein |
| 23.3666 |
Ahg941228 | PHYTOENE SYNTHASE |
| 23.4947 |
Ahg495719 | peroxin 5 |
| 25.3772 |
Ahg481517 | Plant protein of unknown function (DUF827) |
| 26.2298 |
Ahg490893 | heavy metal atpase 1 |
| 27.1662 |
Ahg914489 | SPA1-related 4 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|