Detail



ID : Ahg939752

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|939752|scaffold_600296.1
Sequence
TTTCACCGGC GGCGAGGGAT ATGGTGGTGA TTCACGGAGT GTCTGTTACT CCACGCTTCA CTCTTCCTTG TCGACCTCTC AACACTAGCT TTAATGGCAA TTCCAGCCTC TCCTTCTTCC TCAAAAAGCA CCCTCTCTCT CGGAAGATCT TTGCTGGGAA ACAATCTGCG GAGTTTGATT CTTCTTCACA AGCTATCGCT GCGTCTGAGA AAGTCTTAGT ACCTGATAAT CTTGATGATG ATCCCAGCAG TTTTTCACAA GAACCACAGA TATTTAATCT AGAAAGTCAA ACAATGGAAG AGACTGAGGC ATTAAGAACA GAAGACCAAG CGTCTGTTTT TGATTCGAGT TACAATGATT CTAAAGTCAT CAAGGAGAGA GGAGTGAGAC CAAGAGTAGT TCCCCCACCT GGGGATGGGA AGAAAATATA TGAGATAGAC CCCATGTTAC GAAGTTACAG CAATCATCTT GATTACCGTT ATGGACAGTA TAAAAGATTG CGTGAGGAAA TAGACAAGTA TGAGGGTGGT CTGGAGGCAT TTTCTCGTGG CTATGAAAAG TTAGGATTTT CGCGCAGTGA TGCCGGTATA ACATATAGAG AGTGGGCGCC TGGAGCTAAG GCTGCATCAC TTATTGGAGA TTTCAACAAC TGGAATTCTA ATGCAGATAT CATGACTCGG AATGAATTTG GTGTTTGGGA GATTTTTTTG CCCAACAACA CTGATGGTTC GCCTGCAATT CCTCATGGCT CACGTGTAAA GATTCGTATG GATACTCCGT CTGGCATTAA AGACTCAATT CCTGCTTGGA TCAAATTCTC CGTGCAAGCT CCAGGTGAAA TCCCATTCAA TGGCATATAC TATGATCCTC CAGAAGAGGA GAAATATGTA TTCAAACATC CTCAACCAAA GAGACCTAAG TCGCTGAGGA TTTATGAAGC ACATGTTGGC ATGAGTAGCA CGGAACCAAT GGTCAATACT TATGCTAACT TTAGAGATGA TGTTCTTCCA CGCATCAAAA GGCTTGGCTA TAATGCGGTT CAAATCATGG CTATACAAGA ACATTCATAT TATGCCAGCT TTGGGTACCA TGTCACAAAC TTTTTTGCCC CAAGCAGTCG TTGTGGGACC CCAGAGGAAC TAAAATCTTT GATAGATAGA GCTCATGAGT TAGGCCTGGT CGTTCTGATG GATATCGTTC ATAGCCATGC TTCAAAAAAC ACATTGGATG GGCTGAACAT GTTTGATGGA ACTGATGCTC ACTATTTTCA CTCTGGGCCT CGGGGTTACC ATTGGATGTG GGACTCACGA CTTTTCAATT ATGGGAGCTG GGAAGTATTA CGATATCTCC TTTCAAATGC ACGGTGGTGG CTAGAAGAAT ACAAGTTTGA TGGATTTAGG TTTGATGGTG TAACCTCAAT GATGTATACT CATCATGGGC TCTCGGTTGG ATTTACTGGG AATTACACCG AGTACTTTGG ATTGGAAACT GATGTGGATG CTGTGAATTA TCTCATGCTG GTAAATGATA TGATTCATGG GCTATACCCT GAAGCGATTA CAGTTGGTGA AGATGTTAGT GGTATGCCAA CATTCTGTAT TCCTGTCCAA GATGGTGGCG TTGGATTTGA CTACCGTCTA CACATGGCCA TAGCTGATAA GTGGATAGAA ATTCTCAAGA AGAGAGATGA AGACTGGCAA ATGGGTGATA TCATTTACAC ACTTACCAAC AGAAGGTGGT CAGAGAAGTG TATTGCTTAT GCTGAAAGTC ACGATCAAGC TCTTGTTGGT GATAAAACAA TTGCCTTCTG GTTAATGGAC AAGGATATGT ATGATTTCAT GGCAGTAGAC AGACCATCAA CACCTCTTAT CGATAGAGGA ATAGCTTTGC ATAAAATGAT TAGGCTTATA ACTATGGGAT TAGGCGGAGA AGGATACTTA AATTTTATGG GAAACGAATT CGGACATCCA GAATGGATCG ATTTTCCCAG AGGCGAGCAG CGTCTTTCTG ATGGGAGCGT GATTCCTGGC AACAATTTTA GTTATGACAA ATGCAGACGA AGATTTGATC TTGGGGATGC AGACTATCTC AGATACCGCG GACTGCAAGA ATTTGATCAG GCAATGCAAC ATCTTGAAGA GAATTACGGT TTTATGACTT CTGAGCACCA ATTCATATCA CGAAAAGACG AAGCAGATAG AGTAATCGTA TTCGAAAGAG ATGATCTCGT CTTTGTCTTT AACTTCCACT GGACCAGCAG CTACTTCGAT TACCGCATTG GTTGCTCCAA GCCTGGGAAA TATAAGATCG TATTGGACTC AGACGATCCT CTGTTTGGTG GATTCAATAG GCTCGATCGC AAGGCAGAGT ATTTCACATA TGATGGCTTA TACGACGGAC GACCCAGCTC CTTCATGGTC TATGCACCGT GTAGAACCGC CGTGGTTTAT GCTTTAGCAA ACCACGATTA GGACTTTCAG ACTTTGGATC C 
Length2491
Protein Sequence
Protein Residue
Map Locationscaffold_6: 1048116.. 1054002
Download Sequence
A.thaliana
AGI-codeAT5G03650.1
Descriptionstarch branching enzyme 2.2
TAIR curator summaryEncodes starch branching enzyme (E.C.2.4.1.18) similar to SBE2 from maize and rice. Expressed throughout the plant and highest in seedlings and cauline leaves.
Alias[SBE2.2][starch branching enzyme 2.2]
Gene coexpression
MR
MR Locus Description
2.23607 Ahg483146 disproportionating enzyme 2
4.47214 Ahg323006 Glycosyl transferase, family 35
4.47214 Ahg486775 beta glucosidase 8
5.65685 Ahg473472 UDP-Glycosyltransferase superfamily protein
6 Ahg941495 nudix hydrolase homolog 24
8 Ahg481003 Kinesin motor family protein
8.3666 Ahg470308 debranching enzyme 1
12.6491 Ahg480999 MATE efflux family protein
14.1421 Ahg349774
14.4914 Ahg355933
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression