| Annotation |
|---|
| Description | jgi|Araly1|940600|scaffold_601144.1 |
| Sequence |
GTCTTTCAAT TGTAAGAAAA ATGCAGGAAC AAGCGACTAG CTCTTTAGCT GCAAGCTCTT TACCATCAAG CAGCGAGAGG TCATCAAGCT CTGCTCCACA TTTGGAGATC AAAGAAGGAA TTGAAAGCGA TGAGGAGATA CGGCGAGTGC CGGAGTTCGG AGGAGAAGCT GCCGGAAAAG AAACTTCCGG TAGAGAATCT GGATCGGCGA CTGGTCAAGA GCGGACACAG ACGGCTGTCG GCGAAAGTCA AAGAAAGCGA GGGAGGACAC CGGCGGAGAA AGAGAACAAG CGGCTGAAGA GGTTGTTGAG GAACAGAGTT TCAGCGCAGC AAGCAAGAGA GAGGAAAAAG GCTTACTTGA GTGAGTTGGA AAACAGAGTG AAAGACTTGG AGAACAAAAA CTCTGAACTT GAAGAGCGAC TCTCTACTCT CCAGAACGAG AACCAGATGC TTAGACATAT TCTGAAGAAC ACAACAGGAA ACAAGAGAGG AAGTGGTGGT TCTAACGCTG ATGCAAGCCT TTGATCTCCT TCTTCTTGTG CTAT |
| Length | 544 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 4348367.. 4349576 |
| Download Sequence |
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| A.thaliana |
|---|
| AGI-code | AT5G11260.1 |
| Description | Basic-leucine zipper (bZIP) transcription factor family protein |
| TAIR curator summary | Basic leucine zipper (bZIP) transcription factor. Nuclear localization. Involved in light-regulated transcriptional activation of G-box-containing promoters. Negatively regulated by Cop1. Although cytokinins do not appear to affect the gene's promoter activity, they appear to stabilize the protein. HY5 plays a role in anthocyanin accumulation in far-red light and blue light, but not in red light or in the dark. Mutant studies showed that the gene product is involved in the positive regulation of the PHYA-mediated inhibition of hypocotyl elongation. Binds to G- and Z-boxes, and other ACEs, but not to E-box. Loss of function mutation shows ABA resistant seedling phenotypes suggesting involvement for HY5 in mediating ABA responses. Binds to the promoter of ABI5 and regulates its expression. |
| Alias | [HY5][TED 5][ELONGATED HYPOCOTYL 5][REVERSAL OF THE DET PHENOTYPE 5] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 4.24264 |
Ahg483923 | myb domain protein 12 |
| 15.2315 |
Ahg481961 | cinnamate-4-hydroxylase |
| 16.0935 |
Ahg887428 | PHE ammonia lyase 1 |
| 22.8473 |
Ahg493342 | UDP-Glycosyltransferase superfamily protein |
| 23.2379 |
Ahg482690 | PHE ammonia lyase 1 |
| 26.096 |
Ahg479675 | UDP-Glycosyltransferase superfamily protein |
| 26.9815 |
Ahg349529 | non-intrinsic ABC protein 9 |
| 27.2029 |
Ahg485476 | flavanone 3-hydroxylase |
| 28.9828 |
Ahg496001 | damaged DNA binding 2 |
| 32.3265 |
Ahg326139 | UDP-glucosyl transferase 78D2 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
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| The four seasons |
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| Growth Chamber expression |
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