Detail



ID : Ahg346509

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|346509|fgenesh1_pg.C_scaffold_4002851
Sequence
ATGGGAAGAG GGAGAAGTTC ATCGTCTTCG TCGATAGAGA GTAGCAGCAA GAGCAACCCA TTCGGTGGTT CATCAAGTAC TCGGAACCTA AGCACGGACC TGAGGCTCGG ACTCAGCTTC GGGAAATCCT CAGGGACTCA ATATTTTAAC GGTGGTTATG GGTACTCCGT TGCAGCTCCG GCGGCAGAGG AGGAGGAAGA AGAGAACGAG TGTAACAGTG TAGGGAGCTT CTACGTGAAA GTGAACATGG AAGGAGTTCC AATTGGAAGA AAGATCGATC TAATGTCTCT TAATGGCTAC CACGACTTGA TCAGAACCCT AGATTTCATG TTCAACGCAT CCATTCTCTG GGCTGAAGAA GAAGACATGT GCAACGAGAA GAGTCATGTG CTAACGTACG CAGATAAGGA AGGTGACTGG ATGATGGTTG GGGATGTTCC TTGGGAGATG TTCTTGTCTA CTGTGAGAAG ACTGAAGATT TCAAGAGCTA ATTACCACTA CTGA 
Length504
Protein Sequence
Protein Residue
Map Locationscaffold_4: 21671502.. 21672587
Download Sequence
A.thaliana
AGI-codeAT2G46990.1
Descriptionindole-3-acetic acid inducible 20
TAIR curator summaryEncodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA20 lacks the conserved degron (domain II) found in many family members, and IAA20 fusion proteins are stable in Arabidopsis seedlings. IAA20 transcripts are induced by auxin treatment, and overexpression of IAA20 leads to defects in gravitropism, root development, root meristem maintenance, etiolation, and cotyledon vascular development.
Alias[IAA20][indole-3-acetic acid inducible 20]
Gene coexpression
MR
MR Locus Description
36.7831 Ahg929790
36.8239 Ahg930033 Integrase-type DNA-binding superfamily protein
44.0454 Ahg946012 Zinc finger, C3HC4 type (RING finger) family protein
63.0555 Ahg351608 Protein of Unknown Function (DUF239)
70.3562 Ahg337048 ATP-dependent DNA ligase
75.0333 Ahg337885
93.3702 Ahg337343
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression