Detail


ID : Ahg927275

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|927275|scaffold_202836.1
Sequence
TTTCGCTGTA TTGTTGAGTT ATGGCCGTTG ATTCGGCTGA CCGGCGAGAA GTTATCGTCA AAATCGACGG TGATAACAAT GGAGTCTCCG GAGAGACTGT AGGAAGAATA TGGAGAGACG GAAGTTACGA TTTTTGGACT GATGGTGAAG GTAACCTCAA CAAAGGTCAT AATGCTGCGG CGGTTGATTC CGATAGATCC GCCGCCACCA CGGAGGAGCA ACAAGATGAG GGTTTTGAGT TTCGGCGCGG CGAAGATCCT CCCACCAAGC TTATTGGTCA GTTTCTCCAT AAACAGCAAG CTTCCGGTGA GATTTGTCTT GATATGGACT TAGGTATGGA TGAGCTTCAA TCTAGAGGTT TAACTCCGGT ATCGGAATCT CCGACGTCGG CGAAAGTGCC TACCAAACCT CCTGACCCCG TGGGAAGACG AGACAGCCGC AGTAATAACA ACAATAACGA TGATGGAGAA GTTGTCAAGT GTAGTGGTAA TGCTCCGATT CAGAGAAGCT CTAGCAATTT GCTTAAGATG AGGACTAAGT CACGGCTTTC GGATCCGCCA ACGCCTCAGT TGCCACCGCA AACGGCGGAT ATGAAATCGG GTCGGATCCC GAAATCCGGG CAGATGAAAT CTGGGTTTTT CGGAAAAAGC CCTAAGAATC AAGGGGAGGA AGAAGAAGAT GATCCATTTG CAGCGGAGGA TTTACCAGAA GAGTACAGGA AAGATAAACT TAGTCTATGG ATTGTGTTGG AATGGTTGAG TTTGATTTTG ATTATAGCTG GCTTTGTTTG CACTCTTGCC ATACCTTCCT TGCGTAGGAA GAAACTCTGG GAACTTCAGC TATGGAAATG GGAGTCAATG ATTTTAGTGT TGATCTGTGG TAGGTTAGTG TCTAGTTGGA TTGTTAAGAT TGTTGTCTTC TTCATCGAAA GGAACTTTCT TTTGAGGAAA AGAGTTTTGT ATTTCGTCTA TGGTGTCCGA AAAGCGGTGC AGAATTGCTT ATGGTTAGGA CTTGTTTTAC TCGCTTGGCA TTTCTTGTTT GATGAGAAAG TGGCTAAAGC AGCAAACACT AAGGCTCTTC GGGTTGTGAC TAAGATCTTT GTGTGTTTGT TGGTTGGGTT CTTGTTGTGG CTCGTGAAGA CACTGTTGGT CAAGGTTCTT GCTTCCTCGT TCCATATGAG CACTTACTTC GATAGGATTC AAGAGTCTCT CTTTACTCAG TATGTGATTG AGACGCTCTC GGGTCCTCCT TTGATTGAGA TCCAAAAAAA CGAGGAAGAG GAAGAGAGAA TAAGTGTTGA GGTTAAGAAG TTTCAGAATC CCGGAGGTGT TGAGATTCAG TCAGGGGCTC AGAAAAGTCC GATGAAGACC GGGAAAAGCC CTTTGATCTC TCGTGTTCTA TCTAATGGAG GAGGAGGAGG AGGAGGAGGA GAAAACAAAG GGATTACGAT CGATAGCCTT CATAAGCTGA ATCCTAAGAA TGTTTCGGCG TGGAAAATGA AGAGGCTGAT GAATATAATC CGGAATGGAT CACTTACCAC TTTGGATGAA CAGCTTGAAG ATCCAAACTT GGATGATGAT AAAGGAAACC AAATCAGAAG TGAGTTTGAG GCAAAGCTCG CCGCAAGAAA GATCTTTCAT AATGTTGCTA AGCCAGGATC AAAGTTCATC TACGCGAATG ACATTATGCG GTTTCTGCCG GATGACGAAG CTTTGAAGAC TTTAAGTCTC TTTGAAGGAG CATCTGAGAC GAACAGGATC AGCAAATCAT CTCTTAAAAA CTGGGTGGTG AATGCTTTTA GAGAAAGAAG AGCTCTTGCA TTGACCCTAA ACGACACCAA AACAGCAGTA AACAGGCTTC ACAAGATGGT GAATATCGTG GTTGGGATCA TCATACTTGT TATTTGGCTT ATCATACTTG GAATCACTTC CACCAAGTTC CTCGTGGTCA TGAGCTCGCA AGTTGTGGTT GTCGCATTCA TATTTGGAAA CATGTGCAAG ATAGTATTCG AATCTATCAT CTACTTGTTT GTGATACACC CATTTGATGT AGGCGATCGA TGCGAGATTG ATGGAGTCCA GATGGTTGTG GAAGAGATGA ACATTTTGAC AACAGTTTTC TTGAGATTTG ATAACCAGAA AGTCGTGTAC CCGAACAGTC TTCTCTGGAC TAAATCCATT GGAAACTATT ACCGTAGCCC CGATATGGGA GATGGAATCG AATTCTCCAT CCACATTACT ACTCCAGCTG AGAAAATCAT CCTCATCAAA CAGAGAATCA CAAGTTACAT TGAGGGGAAG AAGGATCATT GGTATCCGGC GCCGATGATA GTATTCAAAG ACATGGAGTC ATTAAACAGT GTGAGAATTG CGGTTTGGCC AACGCATCGA ATGAATCATC AAGATATGGG AGAGAAATGG GCTCGAAGGT CTCAACTTGT TGAAGAAATT GCCAAGATTT GCAGAGAGCT CGACATTGAG TATAGATTGT ATCCTCTTGA CATCAATGTC CGAAACATGC CCACTTCTAC TGTTTTGCCA GTTTCCGACC GTCTTCCACC AAATTGGACT GCTCCAGCTT CTGGCAGCAA CTGAAACTAT AATAAAACTT TTTA
Length2614
Protein Sequence
Protein Residue
Map Locationscaffold_2: 17257906.. 17260838
Download Sequence
A.thaliana
AGI-codeAT1G78610.1
Descriptionmechanosensitive channel of small conductance-like 6
TAIR curator summary
Alias[MSL6][mechanosensitive channel of small conductance-like 6]
Gene coexpression
MR
MR Locus Description
5.83095 Ahg481823 RHOMBOID-like 1
12.8062 Ahg940490 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein
15.0997 Ahg332994 Flavin-binding monooxygenase family protein
17.1464 Ahg945854 Actin-like ATPase superfamily protein
20.6398 Ahg945124 glycine-rich protein
22.4944 Ahg321364 Leucine-rich repeat protein kinase family protein
26.533 Ahg494689 Family of unknown function (DUF566)
27.9285 Ahg475021
29.3939 Ahg471067 RNA-binding KH domain-containing protein
33.8821 Ahg492529 Disease resistance protein (TIR-NBS class)
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression