Detail



ID : Ahg930212

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|930212|scaffold_302669.1
Sequence
CTTGGGAGAT TGATGTAGCA ATCATGAAGC AAGCTCCAGA AAACAGAATT TTTGTCGAGA CAATTGCACG TTTGGTTTCT CAAAAGGGGT TGGAGTTGGA GAGGACGCTC ATGTCCATTG ATACAAATTT TAATGGAGAA AATTTTAGTT TTTTGTGTAA CTCAGACCCT AGTAACGTAT TCTACAAGCA AACGCTTAAT GAATACCTTA ATTCTAAGAA TCAAGAGGAT GATGATTATG AAGAAGAAGC CGATTTTCCG TCGCCTCCAT CTCGTTATCG GTATCTTTCT TTTCGATGTC CTAATTCGAT CACACGCACG GACCTTAATA TTATTAAGCT CACAGCGCAG TTTGTGGCGC GGTACGGCAT GTATTTTGTA CAGGGTTTGA GGGAGAAAGT GGCTAACAAA TCTCAATTTG AGTTTTTGAA GTCGATGAAT ATCAGGTTTA GTTTCTATAA TGGTCTTGTT CGTGCCTATT CCACTGTATT AAGGCCTTGC AGTGATGAAA TTATGATGAA GATTAGTATT GCCTTTGTGG GCGTTTTTGA GGTGTTTTTC AACCGTCTTC AATTGGAGAA GCTTGAGGAA GGAGATGTTA TGGCTATGAT TGATTTGCAT GCTTTTGTGA GTGGTGTTGA CTCTTTTGCT TACATGGATG ATCAAGACTT TAATGATGCC ATGCGTGAAC CTGGACGCAT TTCAATGATG ATGCTACAAT TTTCAGATAT AAAACCACTG GGATCTAACC AGCTCACTAC TATTACTACT ACTACTACTA CTCAAGGTTG TGATCAAAGA CGTTGCTCTC GTGCATATAG ATTGTTTGAA AAGCGGGTCA CTCTCAAGGA GCTTTGTATC ATTAAGCTCA CAGCGCAGTT TGTGGCTCGG TATGGGCCGC GTTTTCATCG GGATTTGATG GAGAGAGTGG CTATGAACCC TTTGTTTGAA TTTCTGAAGC CAACTGATAA CAGGTCAAGA TTTTTCAATT TTATTGAATA TGCTTATTCT AGAGTATTAC TACCTTCAGA TCATCTGTGG AAGAGTGTTG ATGGTTGTAC GGGCGCCGTT CTTGAGTTTT TTTCAAAATG TCTCCAATTG GAGAAGCTCG AGGACGGTGT TGAGATGGCT ACCGTTGATT TGCATGCGCT TTTTGGTGGT CTTGACTGTT TTACTCACCT CAATGATGGA ACCTATTCTT ATATCCCACC ACCTGAACGC CTTTCAACGT TTATGAGATC TCAGCTCTGT AACCCTCAGA ATCACCAAGT ATGTGTACAA GAACCCCTTC TTGGGCCTAT AAGACTGGAT GATACTAAAT CTAGATTCAC TGCAAAGGGG ATCACAACCA AGGAGCTTGG TATGATTATG CTCACAGCGC AGTTTGTGGC GAGGTATGGG TTCCATTTCG GGTGGGATTT GCGGAAGAGA GTTGTTATGA ACCGTCAGCT TGGGTTTATG AAGCGAGCTG ATAGGAGGCA TGAATTCTAC CGTGGGCTTG TTAACGCGTA TTACCTAGTA TTAAGGCCTT CCACACAGCG GGAGGAGCGT GATCCTTGTA TGGCAACATT TCTTGAGAGG TTTTTCGATA TTCTCCGAGT GATGAAGCTG GAGGAGGAGG AAGTGGAGGG AGTTGGTTTG CATGTCTTTG TGGGTGTTGT TGACTGTTTT GCTCGCATGG ATGATGAAGA GTTTTCTGTT GTCATGCCAC CAACAGTATG GAGGCCGCCT GGTTTGCCTC CTCCAAAGAG ATCTCCAGCT GCAGATATTC ATGATTATTG TGTTGATCTT GATGATCCTG AGCCTCATCC TTTTAGGGAT CATCGTCTAA GACCTGCATC TATCCAATCT CATGCTAAGT TGTGTCTCAC ACACAAGCAG CTATGTGTTA TCAAGGTCAC GGCGCAGTTT GAGGCGCGGT ATGGGATGGA TTTTATGCGG GCTTTGATGA CGAGAGTGGC TGAGAAGACA CCTCAAGAGT TTGAGTTTAT GGAGGCGACT AGTGGTAGGA GGTTTGATTT CTATAGTCAG CTTGTTAAGG CATATTCCAG AGTATTAATG CCTTGCAAAA AGCTTGATGC GGACACCGTT CTTGAGGGGT TTTTCCGTTT GGTGGATTGT TTCCAGCAAG AGCGAGTGGA TTTTCCTATG GGTTTAGTGG ATGCTGTTGA CTGTTTTGCT CACATGAATG ATGTCATCAG CCCACTACAC AACCACAACA TTACACTGGT TTATACTGGT CAAGCTAATG TTCAGTGTCC ACCCCCATCA ATGCAACCAG AGCCAAAGAG ACGAAGAACG GTGTCTGGAG AGATACACAG TGAAGGAGAC ACAGGTTATT AGTATATAGA AACTTTGTTT GT 
Length2362
Protein Sequence
Protein Residue
Map Locationscaffold_3: 9375736.. 9378075
Download Sequence
A.thaliana
AGI-codeAT3G22320.1
DescriptionEukaryotic rpb5 RNA polymerase subunit family protein
TAIR curator summaryNon-catalytic subunit common to DNA-dependent RNA polymerases I, II, III and IV; homologous to budding yeast RPB5.
Alias[ATRPABC24.3][NRPB5][NRPD5][RPB5A][RNA POLYMERASE II FIFTH LARGEST SUBUNIT, A]
Gene coexpression
MR
MR Locus Description
39.0128 Ahg490578 cellulose synthase like D4
43.3128 Ahg489695 Protein kinase superfamily protein
47.392 Ahg936571
60.1747 Ahg931891
73.8444 Ahg483548 Protein of Unknown Function (DUF239)
77.5564 Ahg915045 high affinity K+ transporter 5
96.6644 Ahg311362
96.9484 Ahg479996 Uncharacterised conserved protein UCP015417, vWA
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression