| Annotation |
|---|
| Description | jgi|Araly1|949199|scaffold_801086.1 |
| Sequence |
ATTTACTAAA CCCTCCCAAA ATGTCACATT CCTTCTTCCA TTTCTTCCTA ATCTCTCTTT TCCTCTACAA AAATTGCATC GCGCATCGCT ACACATTCAC GGTTAGGGAA GTTCCATATA CGAAACTGTG TAGCACGAAG ACGATTTTAA CCGTTAATAG TCAGTTTCCT GGACCTGTTA TAAAGGTTCA CAAAGGAGAC ACTATTTATG TTAACGTTCG TAACCGAGCT AGTGAAAACA TCACAATGCA TTGGCATGGT GTAGAGCAGC CAAGAAACCC GTGGTCAGAT GGTCCTGAAT ACATCACACA ATGCCCGATT CGACCCGGGT CAGATTTTAT GTACAAAGTC ATATTTTCTA TCGAAGACAC GACTGTTTGG TGGCACGCGC ATAGCTCTTG GACACGTGCA ACTGTACACG GTCTTATTTT CGTATATCCT CGCCCCCCGG AATCCCTCCC GTTCCCAAAG GCGGACCATG AAGTCCCTTT AGTTTTGGGG GAGTGGTGGA AAAGGGATGT GAGAGAGGTG GTGGAGGAGT TTATAAGGAC AGGAGGGGCT CCTAATGTGT CCGATGCTTT GACAATCAAT GGACATCCTG GTTTCTTGTA TCCTTGCTCT AAATCAGATA CCTTTCATCT CAAGGTAGAG AAGGGCAAAA CCTACCGCAT TCGGATGGTA AATGCCGCGA TGAACCTAAT TCTATTTTTC GCAATCGCGA ACCACAGCCT CACCGTGGTT GCGGCAGATG GACACTACAT CAAACCTTTA AAGGCTACTT ATATAACCAT ATCCCCTGGC GAAACGCTAG ACATGTTATT ACAAGCTGAC CAAAACCCAA AACGCATTTA TTACATGGCG GCCAGAGCTT ACCAAACCGG AAATATCGCT TTCGACAACT CCACTACCAT AGGAATCTTA AGTTACTTCT CTTCACACAA AGCGAAAACA CCATCGTTTT CAGGATATTA CCCAACCCTT CCTTTTTACA ATGACACCTC AGCAGCTTTC GGGTTCTTTA CCAAGATCAA AAGCCTATAC TCCGGTCAAG TTCCTGTTCA AATCTCGCGT AGGATAATCA CAACGATTTC AATAAATCTC CGCATGTGTC CTCAAAACTC TTGCGAAGGT CCAAACGGGT CGAGATTAGC AGCGAGTATG AACAACATAT CGTTTGTCAC ACCAAGTCAC ATGGACATAC TAAAAGCTTA TTACTATCAC ATTAAAGGCG TTTATGGAAC GCGGTTTCCA GAGTTTCCAC CGTTGTTTTT CAATTTCACG GCAGAAAATC AACCATTGTT TTTGGAAACT CCGAGACTCG CGACTGAGGT AAAGGTGATT GAGTTCGGGC AAGTGGTTGA GCTTGTTATT CAAGGGACGA GTTTGGTTAA TGCACTCGAT CATCCTATGC ATCTCCACGG TTTTAGCTTC TTTGTGGTTG GAGTAGGGTT TGGGAACTTT AACATAAGTG AAGGAGAACC ATCTTCATTG TATAATCTCG TGGATCCACC GTACAAAAAT ACAATGACCG TGCCCATTAA TGGTTGGATC GCTATCAGAT TTCAAGCTAA TAATCCCGGG GTTTGGTTCA TGCACTGTCA CTTGGATAGA CATCAAACGT GGGGTATGAA TGTTGTGTTC ATTGTTAAGA ATGGGAGAGA GCCAAATCAG CAGATTCTGC CTCCACCAGA TGATTTGCCG CCTTGTTATG AATAATTGAA TGTTACCAGT GCTTT |
| Length | 1735 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_8: 10496424.. 10499554 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G48100.1 |
| Description | Laccase/Diphenol oxidase family protein |
| TAIR curator summary | Encodes a protein that is similar to laccase-like polyphenol oxidases. Involved in lignin and flavonoids biosynthesis. It has four conserved copper binding domains. Expressed in developing testa, where it colocalizes with the flavonoid end products proanthocyanidins and flavonols. Mutant plants exhibited a delay in developmentally determined browning of the testa, characterized by the pale brown color of seed coat. The tt10 mutant seeds accumulate more epicatechin monomers and more soluble proanthocyanidins than wild-type seeds. Flavonol composition was also affected in tt10 seeds, which exhibited a higher ratio of quercetin rhamnoside monomers versus dimers than wild-type seeds. |
| Alias | [ATLAC15][AtTT10][LAC15][TT10][LACCASE-LIKE 15][TRANSPARENT TESTA 10] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 33.4664 |
Ahg926663 | phospholipase D gamma 2 |
| 34.6843 |
Ahg351608 | Protein of Unknown Function (DUF239) |
| 36 |
Ahg932913 | |
| 43.1277 |
Ahg489899 | Subtilase family protein |
| 46.076 |
Ahg478496 | Uncharacterised protein family (UPF0497) |
| 56.7627 |
Ahg933779 | Domain of unknown function (DUF313) |
| 63.7181 |
Ahg350386 | Subtilase family protein |
| 68.9783 |
Ahg897485 | |
| 74.081 |
Ahg474038 | glycosyl hydrolase 9C1 |
| 78.3837 |
Ahg481301 | FASCICLIN-like arabinogalactan protein 3 precursor |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
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| Growth Chamber expression |
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