| Annotation |
|---|
| Description | jgi|Araly1|479067|fgenesh2_kg.3__1768__AT3G16130.1 |
| Sequence |
ATGGTGAAAG CGGGTGAGCG AGAACAAGAA AGCTACAAGT CTAAATTGTT AGATTTAGAG ACCGTGAAGA AGAAGAACTC ATCTTCAAGG CATTTCAAGA GATGGAACTC AGATTCCGCC TTGAGAATTG AAGATCCAGA CATTGATGAT GGCACTGTGT TCAGGAAAAC GGCGACCTCA AGCATCCAAC CAATTCTACC GCTTCGACCG CCTCTTGTTA AGGATGAGGC ACCTCAGCCG CGTGAAGCAA CTGATGAAGA ATTACAGCAA GATTCAGCTA AGACCGTAAT GAGTTACTGC ATTATAGGTT TGAGGTTTCG TGGATTGCAA GCTAATTCAT GTTATTTTGC ATATGTTACA GAGAAGGAGC AGATGAAAGA TAAGTTTGCG AAATTGCTTT TAGGAGAAGA CATGTCAGGA GGAAGCAAAG GTGTTTCGTC AGCTTTGGCA TTATCAAACG CAATCACAAA TCTTTCTGCT TCTGCGTTTG GAGAACTACG GCGTTTAGAG CCAATATCCG AGGATAGAAA AGAACGATGG AGAAGAGAAA TCGGATGGCT TCTCTCTGTT ACTGATCATA TAGTTGAATT CTCTCCAACA CACCATACTA ACGAGGATGG ATCTTCCATG GAGGTAATGA CTACAAAACA AAGAACAGAT CTTGTCTCCA ACATTCCTGC TCTTAAGAAA CTCGACGAAA TGCTCCTCGA TTGTCTTGAT AAATATAAAG AACAGGATGA GTTTTACTAC GTCACACCAG GTTCTCCGGA ATCTGAAAAC AGTAACTCGA CCAGGAACGA TGATAAATGG TGGCTTCCGA TTGTTAAAGT TCCACCTAAA GGCTTATCTG AAACGTTGAA AAGATTTCTA CTGAGTCAGA AAGAGTGTGT GAGCCAAGTG CTTAATTCCG CAATGGCCAT AAACTCTCAA GTTCTTACTG AAATGGAGAT CCCTGAGAGC TACATCGACT CACTTCCTAA GAAAGGGAGA GCTAGTCTTG GAGACATGAT CTATAGAATG ATAACATTAG AGATGTTTGA TGCAGAGCAG TTCCTTCATG AAATGGATTT ATCATCGGAG CACAAGATTC TTGATTTAAA GAACAAATTC GAAGCTTCGG TTGTGATATG GCAGAGAAAG ATAGTGCAGA TAGACAACAA GTCATCGTCT CCATGGAGTA CGAATTTGAG CATGGATAAG AGACAACAGT TAGAAGAAAG AGCAGCAACC ATTTTGCAAC TTATTAAACA AGAATTCCCA GGGATCTCTC AATCTACACT TGACATTAGC AAGATTCAAT TCAACAAAGA TATAGGTTTA GCTATAGTGG AGAGTTACTC GAGAATTCTT GAGAGCTTGG CGCACACGAT AATGTCAAGA ATAGAAGATG TTCTTGAAGC TGATCAGCTA ACACAAAACC CTGAACTCGC GGTTTGTAAG AGACATATAG TGAAGGAAAC AGAGAGTCCA GAGAAGGAAG AAGAACCAAA CTTTTGTCTT TTAGAGGAGA GACCGAAAAA GCAGAAGCCT ACCATTTCAC TATCTGAGGT AATGCAATGG AATATCGAAA CCAATGAACC GAAGAAAGAA AAGAGCGATG CACCGATAAA AGATTCAGGC AAGAAACTGT TGACCAGAGT GTCAAGCATG ATCATGGCTA ACAACAAGAA GCCTACTTCT TATCTTGAAT CTCTTGGAAC CACAAGAAGT CCAACCGCGG GGCGATACTC TTGAAAAAAA AAAGATTTCT TTTGTAAAAT TAGGGGAAGA AAAAACGTTT CAAATGTAAC TGATAAACAG AATATACATA AAATCACTTA AAGGGTTTGA AGTATTGAGA AATGTTGATG AGTTTTAGAA GGAAGAAGAG AAGGTAACAT GAATATAAAT CAGAGCTTGC CACGAGGACC GAGCTTAGGC TTCTCCTGAG GACCTCTCTT GATGGGAAGA ACCTCGCCGG TGGAGGTAGC GCTGACATAA GTAAGCAAAG AGCC |
| Length | 1994 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_3: 6408665.. 6411094 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G16130.1 |
| Description | RHO guanyl-nucleotide exchange factor 13 |
| TAIR curator summary | Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily. |
| Alias | [ATROPGEF13][PIRF2][ROPGEF13][phytochrome interacting RopGEF 2][ROP (rho of plants) guanine nucleotide exchange factor 13] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 4.69042 |
Ahg470689 | photosystem II subunit P-1 |
| 7.34847 |
Ahg485905 | photosystem I light harvesting complex gene 1 |
| 7.48331 |
Ahg915184 | photosystem I subunit l |
| 8.48528 |
Ahg486624 | photosystem I light harvesting complex gene 2 |
| 10.9545 |
Ahg471781 | light harvesting complex photosystem II subunit 6 |
| 11.7473 |
Ahg491882 | Photosystem I reaction centre subunit IV / PsaE protein |
| 13.2288 |
Ahg480223 | photosystem II subunit X |
| 13.8564 |
Ahg490167 | photosystem II subunit Q-2 |
| 15.5885 |
Ahg475174 | photosystem I light harvesting complex gene 3 |
| 16.2481 |
Ahg474340 | photosystem I subunit H2 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|